RNA id: XM_036955312.1


Basic Information

Item Value
RNA id XM_036955312.1
length 2801
RNA type mRNA
GC content 0.50
exon number 8
gene id sav1
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62020594 ~ 62038893 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggaatagggtgccagtagtgcactatatagggaatagggtgccagtagtgcactatatagggtgccagtagagcactatatagggaatagggtgccatttcagaatcACACTGCGTTTATATTATAACCTTTAGTTACCAAGAGCACACTTCTCACTCAGGTTACACACTAAGAATCAAAGCTGTATGGATTCATTGTGCACTTTCTTATGTTCAATGCATCTCAGTgtgagtccaaaatggcaccctataagTCCTGGTCAAATGTTGTGTAGTATAAAAGGATGTAGGGTATCAGTTGACACATCCCTCAGAAATGCTAGGAAGcagaaataaaacaacaacacatcaaaCCTTCCCATGCTAATCCAATGGGTCTTGACCTTGTGACTGTTTGTCCCAGCTTTGAATGACAGCCCAGTCTCATACGGTTGGATATTTTTAGGTTTGTTTTCAGCAGGGGAACTAACTTTGAGAAGGGGTTGTTGGGCTTGCTTTGGACCACTGGTTAATTTTGGAAATGCTTCAAATCACAGAAGAAGGGGACGAATTATGCTTCCAAGAAAGAAAAGTACAAACGAAGCGTCGACACCAGCCGAGGCACATGGAAGATCTGTGAAGAAGGAGACATCACCACTCCTGAAAAATCTCATGCCCTCGTTCATCCGACATGGACCCACTATCCCCAGACGCACTGTGGTCCCTCTGCCGGAGCCTGGCTCAGCCTATCCCGTGGGGCCTGTGTTGGCCGGCAACAAGAGCTTCCTACGCTCCCCCACTGTGCAGAGGTCACCCCACGAGGCGGCTCTGCGGGAACGCCACCGGATGTCAGCCCCTCCGTACCTACCTGGAAGCCTGGGGGATATAACCCACGAGTACGGAGGCTCCTCACAGTCCTTCCTGACAGACGTGAGCTCCATGGCTGAGAATGAGGATGCTGGGCTCTACTACCGCCCCCTGACTCCGGAGCCTTACTCCGAcagccagcagcagcagagacggCCTCAGCCACATCAGCAGCCCAGAGCTCCTGACCACTTACATGAGGACTATAGATACTATGAACAGAGTGAACATCATCAAAGCCTACCACCACGACAACACACTCCCCCGGCCCCCAACGGACCGGCAGCAGGTATTGGTCGAATGCAGTCCAAGTCTCTGGGGAACATGTCCAGTCTGAGCTATGAGGACCTCTCCCTGCCCCGTGGTTGGACGGTAGACTGGACCATCCGAGGCAGGAAGTACTACATCGACCACAACACCAACACCACCCACTGGTCCCAccccctggagagagagggtctgcCCCCTGGCTGGGAGAAGGTGGAGTCGGCTGAGTTTGGACCCTACTACGTGGACCACGTCAACAAGAGGGCTCAGTATAGACACCCCTGTGCCCCTAGCGTGCTCCAATATGACCAGCCCCCTCCCGTTGTATACCGGCCTCGCCCAGCCGAGCGGAACCATCCGGTACTGGTACCAGCCAACCCGTACCACACGGCAGAGATCCCTGGCTGGCTACAGGTGTATGCCCGCGCCCCACTCAAGTATGACCACATCCTGAAGTGGGCGCTGTTCCAGCTGGTGGATCTGGACACGTACCAGGGCATGTTGAAGCTGCTCTTCATGAAGGAACTGGAGCGCATCGTCAAGTCCTACGAGGCCTACCGTcaggccctgctgtctgaggtGGACCAAAGGAGACCGAGGTAACAGTGGTACACTCTGGGGCCCAGGAGCACTTGGGGCCCAGGAGCAGCGGGACAAGAACTTCACAGGGAAGTAGGCCCTATTCACTAGGAAGCAAACAAGACaaaatggtggtgggggggttggctacagtgtgcactaatgaatatgaccctgaaCTGACTGGACAGAAGAATGGAGCCTGTGGATAGCTGGACCTGGGACTTCAACTGTTCTCTTTCTACATTGTTCCTATGAAGTTCTCCCCCTGAAGCTGCTTACAGTACAGAGTTCCACCCGTCTGAGGTTTCTACAACAAGGAAGTCTGTCCCTTTAGAGGTTTCCGCCCTGCCCCAGTAGGTCAGGGTTCACCTCTTTATGATTGACCTCCTTATTTCCGTCTCCTCCTCACCCAAACCGATGTCGTCGTCTCCCCGTTTATATCAGCCAAATGTCCAGATGCTGCTCACATCATGTGGTTACGCAGGTCCCCCTCCCTTCGTGATGATTCGGGACCAAGGACGAGCGACTATGTGAACGCTCCAATGAAGAAAGAAAATGATTctccagctggagagagagatgtttacACTAAAGTTGCTTACAGAAAATGTCATCTGAGAACtggggtcgtgttcattaggcaacAAATGGAAGAACAGACTGCAACATGGGGAGGGACAACCGGGACTCTCGTTTTTCCAAAaggttttgctacagtgtgccccACTGAACACATCCCTGGGTTGTTGTATGGaatctgttatttttttatttttataaagacTGAAGACGATCACAGGGTCTTAAAGACCTGTTGTTGTTTGAATGTCCATAAGTGACTATAAGATTTACAGACTGTCTTTTCCCTCACAGGAACAGCATCTGTTTTATATTGCGCTTTGTAAAATGATTTGCTATGATgtcacttttttttcttcttaagtTGGGAGAGAAGGACTGGCAGCTTCACCTTTTTTTTAATAATTGTATGTTTCCAGATAAAACCATTAATGGAGCAGAATTTATCATTGTATTTCTTTGTAAGCATTTGTAGCCCCTAAAACTGAAGATTTCTTTAACAATAAAAATGTGATCCATTGTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883593 lncRNA upstream 14943 61936517 ~ 62005651 (+) True nin
TU1883718 lncRNA upstream 55107 61964765 ~ 61965487 (+) True G1646414
TU1883696 lncRNA upstream 105097 61914661 ~ 61915497 (+) True G1646394
TU1883609 lncRNA upstream 121543 61898297 ~ 61899051 (+) False pygl
TU1883611 lncRNA upstream 121543 61898297 ~ 61899051 (+) True pygl
TU1883792 lncRNA downstream 1452 62040345 ~ 62042161 (+) True G1646475
TU1883793 lncRNA downstream 3966 62042859 ~ 62056596 (+) False G1646476
TU1883796 lncRNA downstream 3966 62042859 ~ 62045822 (+) False G1646476
TU1883798 lncRNA downstream 3966 62042859 ~ 62047486 (+) False G1646476
TU1883800 lncRNA downstream 3966 62042859 ~ 62056596 (+) False G1646476
XM_036955304.1 mRNA upstream 11293 61924326 ~ 62009301 (+) False nin
XM_036955302.1 mRNA upstream 11293 61924327 ~ 62009301 (+) False nin
XM_036955303.1 mRNA upstream 11293 61924327 ~ 62009301 (+) False nin
XM_036955306.1 mRNA upstream 11293 61924329 ~ 62009301 (+) False nin
XM_036955305.1 mRNA upstream 14943 61924326 ~ 62005651 (+) False nin
XM_036955314.1 mRNA downstream 56548 62095441 ~ 62210453 (+) False map4k5
XM_036955315.1 mRNA downstream 56548 62095441 ~ 62210453 (+) False map4k5
XM_036955316.1 mRNA downstream 56548 62095441 ~ 62210453 (+) False map4k5
XM_036955317.1 mRNA downstream 56548 62095441 ~ 62210453 (+) False map4k5
XM_036955318.1 mRNA downstream 56548 62095441 ~ 62210453 (+) False map4k5
TU1883513 other upstream 459510 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 675440 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 728753 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 817242 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1281637 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 105290 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 448108 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 978062 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1036256 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1163863 63202756 ~ 63204057 (+) False G1647477

Expression Profile