RNA id: XM_036955332.1


Basic Information

Item Value
RNA id XM_036955332.1
length 690
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118941522
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62455117 ~ 62460307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCTGGGAAGTGGAGTTCTAGTCCATCAGAGAGCAGGAAACTGCAGGCAATAGAGACGGTACTCCTGTATGAGTTCACCTTCACATTTATAACTACACTCAAAACAGCTATTTAGCTTGTCCTCTGGATTCCTAACACCATGAACGGGTCAGCAATGTATACTGCGCCTATCGTGCTGGATATAAAGTTGAAAAGAGGACCACAAGgtCTGGGGTTTAACATCGTGGGGGGTCTGGACCAGCAGTATGTCCTGAATGACAGTGGGATTTATGTGGCCAAAATCAAACAGAATGGCGCAGCAGCGCTGGATGGAAGATTACAAGAGGGAGACAAGATATTGGCGATTAATGGTCACAAGCTGGAACACCTGTCACACAGTGCTGCGGTGGAGCTCTTCACGTCAGCGGGAGAGGACGTGCAGCTTCGCGTGcagcagaggCCCACCATGGTCATGAATGTTCCCCCCAGTCCCAGGCCTGACGGCGactcttctgtctcctccttgGTAATACTTGTGGCCGTCCTGGGAGCTGCTGCAGCCGTTACTGTCCTCTACATGCGCTTCCAGCCACAACTGAGGAGGCATTTTTAACACGCTAATTTTCTcctcaaaaacatttttttttttttaagagcaAAAGCTGGGACTGAACTTTGCTGAAggccaaaaaaaaaaagaaaatgaggA

Function

GO: NA

KEGG:

id description
K20057 SYNJ2BP, OMP25; synaptojanin-2-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883952 lncRNA upstream 6077 62448808 ~ 62449040 (+) True G1646607
TU1883775 lncRNA upstream 9082 62414368 ~ 62446035 (+) True lgals3a
TU1883917 lncRNA upstream 57128 62342250 ~ 62397989 (+) True G1646573
TU1883906 lncRNA upstream 99566 62350547 ~ 62355551 (+) True G1646564
TU1883905 lncRNA upstream 99883 62328750 ~ 62355234 (+) False G1646564
TU1884004 lncRNA downstream 82837 62543144 ~ 62543659 (+) True G1646642
TU1884011 lncRNA downstream 99899 62560206 ~ 62560803 (+) True G1646649
TU1884013 lncRNA downstream 101459 62561766 ~ 62562776 (+) True G1646650
TU1883763 lncRNA downstream 142635 62602942 ~ 62603952 (+) True G1646446
TU1884031 lncRNA downstream 153206 62613513 ~ 62614196 (+) True G1646666
XM_036955331.1 mRNA upstream 9173 62443143 ~ 62445944 (+) False lgals3a
XM_036955330.1 mRNA upstream 9173 62443144 ~ 62445944 (+) False lgals3a
XM_021574895.2 mRNA upstream 32768 62419356 ~ 62422349 (+) True cdkn3
XM_036955323.1 mRNA upstream 75600 62276111 ~ 62379517 (+) False sos2
XM_036955320.1 mRNA upstream 181753 62248727 ~ 62273364 (+) True l2hgdh
XM_036955334.1 mRNA downstream 5947 62466254 ~ 62485447 (+) True LOC110504280
XM_021585447.2 mRNA downstream 26614 62486921 ~ 62493638 (+) False srsf5a
XM_036955337.1 mRNA downstream 39769 62500076 ~ 62602774 (+) False LOC110504279
XM_036955335.1 mRNA downstream 39770 62500077 ~ 62602774 (+) False LOC110504279
XM_036955336.1 mRNA downstream 39771 62500078 ~ 62602774 (+) False LOC110504279
TU1883836 other upstream 309827 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 894033 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1109963 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1163276 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 1251765 61202358 ~ 61203352 (+) True G1646089
TU1883744 other downstream 26694 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 556648 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 614842 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 742449 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 931318 63391625 ~ 63391832 (+) False LOC110498409

Expression Profile