RNA id: TU1883906


Basic Information

Item Value
RNA id TU1883906
length 317
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1646564
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62328750 ~ 62355551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTAATATTTTCTTCAGTCCATAGCAGAGGGACcccgtctctcctgtcctctctgtctctaggttGTCTTTGTCTCTACAGTAATATGTAAAATaatgttggtgtctgtctctacagtagtatgtaatgttggtgtctgtctctacagtagtatgtaatgctggtgtctgtctctacagtagtatataatgttggtgtctgtctctacagtagtatgtaatgttggtgtctatctctacagtagtatgtaatgttggtgtctatctctacagtagtatgtaatgttgttgtctgtctctacagtagtatgtaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883912 lncRNA upstream 14539 62335733 ~ 62336008 (+) True G1646569
TU1883899 lncRNA upstream 40823 62309441 ~ 62309724 (+) True G1646560
TU1883897 lncRNA upstream 45373 62304931 ~ 62305174 (+) True G1646558
TU1883889 lncRNA upstream 57701 62292543 ~ 62292846 (+) True G1646552
TU1883888 lncRNA upstream 58040 62292292 ~ 62292507 (+) True G1646551
TU1883775 lncRNA downstream 58817 62414368 ~ 62446035 (+) True lgals3a
TU1883952 lncRNA downstream 93257 62448808 ~ 62449040 (+) True G1646607
TU1884004 lncRNA downstream 187593 62543144 ~ 62543659 (+) True G1646642
TU1884011 lncRNA downstream 204655 62560206 ~ 62560803 (+) True G1646649
TU1884013 lncRNA downstream 206215 62561766 ~ 62562776 (+) True G1646650
XM_036955320.1 mRNA upstream 77183 62248727 ~ 62273364 (+) True l2hgdh
XM_036955321.1 mRNA upstream 106266 62217103 ~ 62244281 (+) False cdkl1
XM_036955322.1 mRNA upstream 106268 62217121 ~ 62244279 (+) True cdkl1
XM_036955318.1 mRNA upstream 140094 62095441 ~ 62210453 (+) False map4k5
XM_021574895.2 mRNA downstream 63805 62419356 ~ 62422349 (+) True cdkn3
XM_036955331.1 mRNA downstream 87592 62443143 ~ 62445944 (+) False lgals3a
XM_036955330.1 mRNA downstream 87593 62443144 ~ 62445944 (+) False lgals3a
XM_036955332.1 mRNA downstream 99566 62455117 ~ 62460307 (+) True LOC118941522
XM_036955334.1 mRNA downstream 110703 62466254 ~ 62485447 (+) True LOC110504280
TU1883836 other upstream 205257 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 789463 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1005393 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1058706 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 1147195 61202358 ~ 61203352 (+) True G1646089
TU1883744 other downstream 131450 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 661404 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 719598 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 847205 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 1036074 63391625 ~ 63391832 (+) False LOC110498409

Expression Profile