LOC110514319 (rbm25)


Basic Information

Item Value
gene id LOC110514319
gene name rbm25
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63648369 ~ 63719010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955366.1
ATCCCACAATGCATTGCAAAAAACACAGGTCCTTGTTAGAGGCATAacgtagctagcaagttagccatTGAAAGACCGATCAAATATCGTTCATATAGTAATTTAGACTGACTTATATGAAAACAGATATAATACGTTGGTTACAAGAGTACATTGTGTGCACGACGCCTGTTTTCAGGTCACTCCACCTCCCAAGATGTCGTACCCCCCTCACCTGAACCGCCTCCCCCAGTTGCCCCCCGGGATTCGCCCTCCCCACTTCGCAGGGTTCCCCCAGGGAGTCCCAGCAGGTACACCCATGATTCCAGTCCACATGGGGATAATGACCTCTGCACCTACGGTCCTGGTTCCTACCACAGTGTCTATGGTCCAGAAGCCTCCTGCTCAGAGGAAAGAGCTGAACCCAGTCAGAGCCAAGGAGAACCAGGAGGGGGGCAGTGGTCCCACCACCACAGTGTTTGTAGGGAACATCTCCGAGAAGGCTTCAGACATGCTGGTCAGACAGCTGCTAGCGAAATGTGGCCTGGTCCTGAGCTGGAAGAGGGTCCAAGGGGCTTCTGGGAAACTGCAAGGTAAAAACAAAACAGcGTTTGGTTTCTGTGAGTACAAGGAGCCAGAGTCCACCCTGCGTTCCCTGCGTCTGCTACACGAGCTGTTGCTGGGAGACAAGAAGCTGCTGGTCAAGGTGGATGCTAAGACCAAGGCCCAGCTTGAAGAATGGAAGGCTAGGAAGAGGAACTCCAAcgggGGAGCCATGTCAGAGGACGGGctcaaggaggaggaagaagaggaggaggaggaggatcttGATGAGGACACAAAGCGCCGTGACCAGATAGTGAAAGGGGCCATCGAGGGGTTGATCCGGGAGTACGGCAGTGAGCTCAACGCCCCTTCTCAGGACGGAGACAACCAGCCCcgcaagaagaagagagagaagaaagaggagGAGGACATCAATGTGATGGAGATGGAGGATGACAAAAGAGACCTGATATCCAGAGAGATCTCTAAGTTCCGGGACACTCACAAGAaactggaggaggagaagggtaaGAAAGAGCAGGAACGGCAAGAGATCGAtaaggacaggagggagagggacaaagagagggagcgagagagggagcgcCGGGACcgcgagagggagaaggagaaggagagaaacgaCAACATcaaggagagagagcgggacagagaccgggaccgCATCGATCGGGAACGTGAACGgacgaaggagagagaaagggagaggggagagagggaacgaggagagagggaacggggagagagggaacgaggagagagggagcgaggagagagggaacgCGTGAAGGAGCGGAGTCGAGAAGTCAGCAAAGACCGCAGTAAATCCAGAGAACGGAGCCGCGATGAGAAGAAACACGACCGCGAGGAAGATCAGGAGGAGGCGTACGAACGCAGGAAACTGGAGAGGAAGATGAGGGACAAGGAGACTGCTTACCAGGAACGTCTGAAGAACTGGGAGATCAGGGAGAGGAAGAAGGCTCGGGACTACGAcaaagagaaccagagagaggaggagagacgccATGAGATGaCCAAAGAAGCCAAGCGTCTGAAAGAGTTCCTGGAAGATTATGACGATGACAGAGATGAGTCCAAATACTACAGGGGTAGTGCTTTACAGAAACGTCTGAGAGACCGTGAGAAGGAGACGGAGCTGGATGATAGAGACcggaagagggagaaggaggagcatGATCAGATCAGACAGAGACTGTTAGCTGAGGGACACCCAGACCCTGAGGCCGAGCTGCAgaggatggaggaggaggcagagcgGAGGCGGCAGCCCCCAGTGAAGCCGGAGGaggaggtgcagcaggagaaaccACACAGGGAGAGGGAGCACAGGGAGCACCGAGAGAGGGAGCACCGAGAGAGGGAGCACCacagggacaggagaggaggaggaggtggtggaggtgcaGACAGGCCTCCTCCCGAACACCCTCAGTCCCAATCAGACGATGAcgtggaggatggagaggagctTGACGATCGTGACGGGGACGACTCGTCAGACGCCAGGACACACCCACACCTCAAGCCCACACTGCGGCCAATCACGTCGGCACCCTCTGTGTCGTCGGGCAGCGGCGGCGCCACGCCCAACTCCCCTGGCAACGAGTCTCCGTGTGGCATCATCATTCCTCATGAGAACTCTCCAGACGCCCAGCCCACAGATGAACACCGGCCCAAGATAGGCCTCAGCCTCAAACTGGGAGCCGGCGCCAGCCCCAGCCATCAGGTCCACACTGGGAGTAAACGTAAGAAGCTGGCCAACGTCGACAGCGTCTTCAACAAGTTCGGCGAGGAGGAGGCCGACGAGGCGCCTCGTAAACGTAAGCTGGTTCCGCTGGACTACGGCGAGGATGATAAGAGCTTGGGTCTGGACGGGGCAGAGGTACCCGGAGGGAAGGGAGGACAAAACACAGAGGAGAAACGGAAACACATCAGGAGTCTCATTGAGAAGATCCCTACAGCCAGACCGGAGCTGTTTAACTACCCTCTGGACTGGACTGCTGTGGACTCGACTCTGATGGACCGTCGCATCAGACCCTGGATCAACAAGAAGATTATAGAATATATCGGAGAGGAGGAAGCTACGCTAGTCGACTTCGTTTGTTCGAAGGTCATGTCTCACGGCACACCGCAGGGGATCTTGGATGATGTTGCCATGGTTCTGGACGAAGAGGCCGAGGTGTTCATAGTTAAAATGTGGAGGCTGTTGATCTACGAAACGGAGGCCAAGAAGATTGGCCTGGGGAAATGAAGActagtactactacagtactactatctagtactactacagtactactatctAGTACAACTACAGTATTACTGCTGTCAAGGACAGTTTTTTCTTCAAGTCTCTTTATGTCTCTGACTGATCGACTGATCACACGGACACCTCTCACTCAGTAGGGTGTCGAGACTATGAACATGGGCCTGTTACCAGTCCTCTACCCCCCAACCACCCTCTACCGCTCCCcgaccccctctaccccctctctacctctccccaaccccctgtaccccaatccctccctacccccctctACCGCTCCCcgaccccctct
>XM_036955367.1
ATCCCACAATGCATTGCAAAAAACACAGGTCCTTGTTAGAGGCATAacgtagctagcaagttagccatTGAAAGACCGATCAAATATCGTTCATATAGTAATTTAGACTGACTTATATGAAAACAGATATAATACGTTGGTTACAAGAGTACATTGTGTGCACGACGCCTGTTTTCAGGTCACTCCACCTCCCAAGATGTCGTACCCCCCTCACCTGAACCGCCTCCCCCAGTTGCCCCCCGGGATTCGCCCTCCCCACTTCGCAGGGTTCCCCCAGGGAGTCCCAGCAGGTACACCCATGATTCCAGTCCACATGGGGATAATGACCTCTGCACCTACGGTCCTGGTTCCTACCACAGTGTCTATGGTCCAGAAGCCTCCTGCTCAGAGGAAAGAGCTGAACCCAGTCAGAGCCAAGGAGAACCAGGAGGGGGGCAGTGGTCCCACCACCACAGTGTTTGTAGGGAACATCTCCGAGAAGGCTTCAGACATGCTGGTCAGACAGCTGCTAGCGAAATGTGGCCTGGTCCTGAGCTGGAAGAGGGTCCAAGGGGCTTCTGGGAAACTGCAAGcGTTTGGTTTCTGTGAGTACAAGGAGCCAGAGTCCACCCTGCGTTCCCTGCGTCTGCTACACGAGCTGTTGCTGGGAGACAAGAAGCTGCTGGTCAAGGTGGATGCTAAGACCAAGGCCCAGCTTGAAGAATGGAAGGCTAGGAAGAGGAACTCCAAcgggGGAGCCATGTCAGAGGACGGGctcaaggaggaggaagaagaggaggaggaggaggatcttGATGAGGACACAAAGCGCCGTGACCAGATAGTGAAAGGGGCCATCGAGGGGTTGATCCGGGAGTACGGCAGTGAGCTCAACGCCCCTTCTCAGGACGGAGACAACCAGCCCcgcaagaagaagagagagaagaaagaggagGAGGACATCAATGTGATGGAGATGGAGGATGACAAAAGAGACCTGATATCCAGAGAGATCTCTAAGTTCCGGGACACTCACAAGAaactggaggaggagaagggtaaGAAAGAGCAGGAACGGCAAGAGATCGAtaaggacaggagggagagggacaaagagagggagcgagagagggagcgcCGGGACcgcgagagggagaaggagaaggagagaaacgaCAACATcaaggagagagagcgggacagagaccgggaccgCATCGATCGGGAACGTGAACGgacgaaggagagagaaagggagaggggagagagggaacgaggagagagggaacggggagagagggaacgaggagagagggagcgaggagagagggaacgCGTGAAGGAGCGGAGTCGAGAAGTCAGCAAAGACCGCAGTAAATCCAGAGAACGGAGCCGCGATGAGAAGAAACACGACCGCGAGGAAGATCAGGAGGAGGCGTACGAACGCAGGAAACTGGAGAGGAAGATGAGGGACAAGGAGACTGCTTACCAGGAACGTCTGAAGAACTGGGAGATCAGGGAGAGGAAGAAGGCTCGGGACTACGAcaaagagaaccagagagaggaggagagacgccATGAGATGaCCAAAGAAGCCAAGCGTCTGAAAGAGTTCCTGGAAGATTATGACGATGACAGAGATGAGTCCAAATACTACAGGGGTAGTGCTTTACAGAAACGTCTGAGAGACCGTGAGAAGGAGACGGAGCTGGATGATAGAGACcggaagagggagaaggaggagcatGATCAGATCAGACAGAGACTGTTAGCTGAGGGACACCCAGACCCTGAGGCCGAGCTGCAgaggatggaggaggaggcagagcgGAGGCGGCAGCCCCCAGTGAAGCCGGAGGaggaggtgcagcaggagaaaccACACAGGGAGAGGGAGCACAGGGAGCACCGAGAGAGGGAGCACCGAGAGAGGGAGCACCacagggacaggagaggaggaggaggtggtggaggtgcaGACAGGCCTCCTCCCGAACACCCTCAGTCCCAATCAGACGATGAcgtggaggatggagaggagctTGACGATCGTGACGGGGACGACTCGTCAGACGCCAGGACACACCCACACCTCAAGCCCACACTGCGGCCAATCACGTCGGCACCCTCTGTGTCGTCGGGCAGCGGCGGCGCCACGCCCAACTCCCCTGGCAACGAGTCTCCGTGTGGCATCATCATTCCTCATGAGAACTCTCCAGACGCCCAGCCCACAGATGAACACCGGCCCAAGATAGGCCTCAGCCTCAAACTGGGAGCCGGCGCCAGCCCCAGCCATCAGGTCCACACTGGGAGTAAACGTAAGAAGCTGGCCAACGTCGACAGCGTCTTCAACAAGTTCGGCGAGGAGGAGGCCGACGAGGCGCCTCGTAAACGTAAGCTGGTTCCGCTGGACTACGGCGAGGATGATAAGAGCTTGGGTCTGGACGGGGCAGAGGTACCCGGAGGGAAGGGAGGACAAAACACAGAGGAGAAACGGAAACACATCAGGAGTCTCATTGAGAAGATCCCTACAGCCAGACCGGAGCTGTTTAACTACCCTCTGGACTGGACTGCTGTGGACTCGACTCTGATGGACCGTCGCATCAGACCCTGGATCAACAAGAAGATTATAGAATATATCGGAGAGGAGGAAGCTACGCTAGTCGACTTCGTTTGTTCGAAGGTCATGTCTCACGGCACACCGCAGGGGATCTTGGATGATGTTGCCATGGTTCTGGACGAAGAGGCCGAGGTGTTCATAGTTAAAATGTGGAGGCTGTTGATCTACGAAACGGAGGCCAAGAAGATTGGCCTGGGGAAATGAAGActagtactactacagtactactatctagtactactacagtactactatctAGTACAACTACAGTATTACTGCTGTCAAGGACAGTTTTTTCTTCAAGTCTCTTTATGTCTCTGACTGATCGACTGATCACACGGACACCTCTCACTCAGTAGGGTGTCGAGACTATGAACATGGGCCTGTTACCAGTCCTCTACCCCCCAACCACCCTCTACCGCTCCCcgaccccctctaccccctctctacctctccccaaccccctgtaccccaatccctccctacccccctctACCGCTCCCcgaccccctct

Function

symbol description
rbm25 Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Located in nuclear speck.

NR:

description
PREDICTED: RNA-binding protein 25 isoform X1

GO: NA

KEGG:

id description
K12822 RBM25, S164; RNA-binding protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955366.1 False 3128 mRNA 0.55 18 63648369 63719010
XM_036955367.1 True 3113 mRNA 0.56 18 63648369 63719010

Neighbor

gene id symbol gene type direction distance location
plek2 plek2 coding upstream 82885 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 113666 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 148197 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 233787 63380908 ~ 63414582 (+)
rtf1 rtf1 coding upstream 276034 63348949 ~ 63372335 (+)
ccdc177 LOC106586969 coding downstream 474499 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 483210 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 496276 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 762417 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 821275 64540285 ~ 64552914 (+)
G1647584 NA non-coding upstream 958 63646266 ~ 63647411 (+)
G1647616 NA non-coding upstream 23294 63624718 ~ 63625075 (+)
G1647615 NA non-coding upstream 27372 63620721 ~ 63620997 (+)
G1647613 NA non-coding upstream 30216 63617786 ~ 63618153 (+)
G1647612 NA non-coding upstream 32338 63615658 ~ 63616031 (+)
G1648045 NA non-coding downstream 59 63719069 ~ 63723384 (+)
G1648080 NA non-coding downstream 4516 63723526 ~ 63723875 (+)
G1648081 NA non-coding downstream 5040 63724050 ~ 63724261 (+)
G1648082 NA non-coding downstream 6175 63725185 ~ 63725410 (+)
G1648088 NA non-coding downstream 41463 63760473 ~ 63767270 (+)
G1647477 NA other upstream 444312 63202756 ~ 63204057 (+)
G1647411 NA other upstream 571226 63075149 ~ 63077143 (+)
G1647342 NA other upstream 629681 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1154650 62486921 ~ 62493719 (+)
G1648296 NA other downstream 409198 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1261354 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1742763 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1825367 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1859429 65578439 ~ 65582582 (+)

Expression


Co-expression Network