G1648088


Basic Information

Item Value
gene id G1648088
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63760473 ~ 63767270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885849
gtggaatgctttcaacaccttgtagagtccatgccccgacaaattcaagggggaggatgaggaaggtgttcttaatgttttgtacactcagtgaataCATGAATAATGATTCTGTTTATTGGGGACGATAAAATACATCCTCACATTGTATAGTAAGTGACAGATAATAGACAGCACACTGTACATTGTAATCACATGACAGAAATGGGTTTGttcttcgtcccaaatggcatcctattctactactttatagtgcactactttatagtgctctacttttcaccagagccttATGCCACACATGACGCCCTCCAGTCCACCGAGCTCAGCTTCCACGGGTGGCCTGGTCTCGGTCAGGGATCAATTACATCTGTTTATCTGAGGAGCGCTGAAACTTCCAAATCAGAGCCATGACGACCAGGCCGTAGAAGGTACTCTTAGCGATGAAGATGCTGTAGGCCAGCTTGGCAGTCTGGGTGCTCTTCACGTAGTACTCTGTCGTCATCCCTCCATCAGCACCTTCTTCTCCGTTCATGTGATCTGCAACATACACGTCATCGGTCCCATTGAAGAAGCGGACGGTGCAGGTGAATCTGTTAGAGGCCGTGTTCCATGTCTTGGCTGGGACTCTCAGTCTGCTGGTGATACTGTAGCGTCTGTTTTCATCCCTCAAGGCAGTGTTGTCGGTCCCCACTCCATCGGTGATGTTGGCGCCTCCATTTAACTGCCAGAACACAGTGACGTGGTCGGGGTAGAAGTCGGTGGCCACACACACCaacgtcttcttcttcttcttgtttctaTCTTCACACTCCTTAGTGGAGGGTGGAAGGACTTTGACTTTGGGTGGAGTGACAGGGATGTCTGGCTCTGCAGGGAGGAAATAGAAGAAGCTTTAACCTTTAACAGTCAATCAATGGCTCTGTTTATTGTCGACTCATACCTGAACCTGAGTGCTTTAAAAGAGATGAGACAGAAATGACACCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCAGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCAGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCggtcctgtcttTCTCCTTCTATAAACCGGTCCAGTAACATCAAGGCAACATGAACCACCAAATGCTGTGTCCCGACAAGCCCATAATAACACAACATTTCATTCAGCATCTCAGAGTGAACCTCTTTGCAACCCAGCTGCCAAAGTCATTGTCAAGACCGTCGAACATGAAAGCTATAATATACGATTATTACAGTATTTTTACAGtattattacagttttttttacagtatttttACAGTATTTTTACAGCGTCCTTACCCAGAACTGTTAGCATGGTTCCCTCTCCAAAGTAGGCAGGATAAGCACCAGAGCACACCACATACTCACAGACAGAAAACCAGGCTGATGCAAGCTAGCAAGTACTGTAGTTGCTGTAGTTTGTCTTTACCAAAGGGGGTtaatactgtagttactgtagtttgTCTTTACCAAAGGGGGTTAATACTGTAGTTGCTGTAGTTTGTCTTTACCAAAGGGGTTAGTACTGTATTTCTAAGCATGTTCATGTCAACAGAGcttaactctctttctctgttagcTCTATTCACAGGACTAAAACAAACCCCTCCTGAACATTTGCATGTTCAACTAATATACCAAATCAATCAACTAGAATTCAACCCATTATTAAAAATGATTTCAATATTGTGTATAACAAACTCTGCCTTCTCCGTGTTCCACGGAGAGATACCATGCTCTACTTTACAGGCTCTGTAGTATGACCCAGTTCTGACCCGGTTCTACTACTTTCCTTGGTCTGAACTATTAAAAGGGTTTCTTCCAACTGATCCAACACCGTGTAGATGAATTCAAACTAACGTCTGGGAGGATTTTCAACATTGTTTTCTACGTATCTATTTCTCTTCATCTGTGGTTTACACACGATTAGAAATCATCCAGTCTGTCATTAACAGATACATCAATGTGGGTTGTATCTAGAAGAGTCTATACACATTTAATCATCGGGTTTCTCACCCAGAGCTGTGAGTTTTGGTGCCGCCGCTGAAACTCACCGCTCATAACAGAGCTGATAACAACTAGAACCATGAGAGATGTGGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGTCTGGGCATAGAACCAGACCACTTTTTCAATCCTGGGTCTGATACCTTGCTGGGTAAAATGTTAGAGGAAGATAACTGATGTTTTTACTGTGATCCAGTTACATTAAAATAACCTTTTAAAGTGTTACTTTTTTTATATTGCAGAATATTGGACACGTTTTCTCCATGCTAGTACGTAACATTTGGTAGTATATTTTCTGACCTAAAACGGTGAGTTTGGTGCCGGCTCCAAGTCTATGGCTTCCCGAGTACGAGCGCAGAGCGACAAGGCTGTCTCCTAAAGTCTCTAGTTCTGACAAGGACTCTGGACTTTCTCAACCTTTGTTACTCTGTTAGAAGTACATTCAAATACTCTTCACAGTAACTCAGCCACGGGTATAATCTAAATTATAACCAAATACATTATTGTGACTATTTTTCTAATGAAATGTAAGAGGTTTTCATCTCCAACAGTCATTTGGTTAATTGT
>TU1885850
TGACACAGGCTAATGTACATCCTAGTTCTACATAACGATGTAGAGAAGCTCACTAGTTTACTTACGATTTTACTAGagaatgacaacaaaaaaaaagagtaGCATACTATTGTCGTTCAATGAAACCTGTTTCTTCTCATGAACAAGGACAGTGTTTTAGTTCATAATTATTTGACCATACCTTCTTCTCCGTTCATGTGATCTGCAACATACACGTCATCGGTCCCATTGAAGAAGCGGACGGTGCAGGTGAATCTGTTAGAGGCCGTGTTCCATGTCTTGGCTGGGACTCTCAGTCTGCTGGTGATACTGTAGCGTCTGTTTTCATCCCTCAAGGCAGTGTTGTCGGTCCCCACTCCATCGGTGATGTTGGCGCCTCCATTTAACTGCCAGAACACAGTGACGTGGTCGGGGTAGAAGTCGGTGGCCACACACACCaacgtcttcttcttcttcttgtttctaTCTTCACACTCCTTAGTGGAGGGTGGAAGGACTTTGACTTTGGGTGGAGTGACAGGGATGTCTGGCTCTAAAACAGTGAGCTTTGTTCCATTTCCAAAGTAGGGCACACTTCCAGTGTCACATCGCTACTCTCCTATTCCAAAAATACCTCAAATCTCTCTGTCATTCACCCTCTAGGGAAAAtgaacagagatacagagaacagATACTACCTCATATCTCTCTGTCATTCATCCTCTAGGGAAAAtgaacagagatacagagaacagATACTACCTCAGATCTCTCTGTCATTCATCCTCTAGGGAAAAtgaacagagatacagagaacagATACTACCTCAG
>TU1885851
TGACACAGGCTAATGTACATCCTAGTTCTACATAACGATGTAGAGAAGCTCACTAGTTTACTTACGATTTTACTAGagaatgacaacaaaaaaaaagagtaGCATACTATTGTCGTTCAATGAAACCTGTTTCTTCTCATGAACAAGGACAGTGTTTTAGTTCATAATTATTTGACCATACCTTCTTCTCCGTTCATGTGATCTGCAACATACACGTCATCGGTCCCATTGAAGAAGCGGACGGTGCAGGTGAATCTGTTAGAGGCCGTGTTCCATGTCTTGGCTGGGACTCTCAGTCTGCTGGTGATACTGTAGCGTCTGTTTTCATCCCTCAAGGCAGTGTTGTCGGTCCCCACTCCATCGGTGATGTTGGCGCCTCCATTTAACTGCCAGAACACAGTGACGTGGTCGGGGTAGAAGTCGGTGGCCACACACACCaacgtcttcttcttcttcttgtttctaTCTTCACACTCCTTAGTGGAGGGTGGAAGGACTTTGACTTTGGGTGGAGTGACAGGGATGTCTGGCTCTGCAGGGAGGAAATAGAAGAAGCTTTAACCTTTAACAGTCAATCAATGGCTCTGTTTATTGTCGACTCATACCTGAACCTGAGTGCTTTAAAAGAGATGAGACAGAAATGACACCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCAGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCAGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCggtcctgtcttTCTCCTTCTATAAACCGGTCCAGTAACATCAAGGCAACATGAACCACCAAATGCTGTGTCCCGACAAGCCCATAATAACACAACATTTCATTCAGCATCTCAGAGTGAACCTCTTTGCAACCCAGCTGCCAAAGTCATTGTCAAGACCGTCGAACATGAAAGCTATAATATACGATTATTACAGTATTTTTACAGtattattacagttttttttacagtatttttACAGTATTTTTACAGCGTCCTTACCCAGAACTGTTAGCATGGTTCCCTCTCCAAAGTAGGCAGGATAAGCACCAGAGCACACCACATACTCACAGACAGAAAACCAGGCTGATGCAAGCTAGCAAGTACTGTAGTTGCTGTAGTTTGTCTTTACCAAAGGGGGTtaatactgtagttactgtagtttgTCTTTACCAAAGGGGGTTAATACTGTAGTTGCTGTAGTTTGTCTTTACCAAAGGGGTTAGTACTGTATTTCTAAGCATGTTCATGTCAACAGAGcttaactctctttctctgttagcTCTATTCACAGGACTAAAACAAACCCCTCCTGAACATTTGCATGTTCAACTAATATACCAAATCAATCAACTAGAATTCAACCCATTATTAAAAATGATTTCAATATTGTGTATAACAAACTCTGCCTTCTCCGTGTTCCACGGAGAGATACCATGCTCTACTTTACAGGCTCTGTAGTATGACCCAGTTCTGACCCGGTTCTACTACTTTCCTTGGTCTGAACTATTAAAAGGGTTTCTTCCAACTGATCCAACACCGTGTAGATGAATTCAAACTAACGTCTGGGAGGATTTTCAACATTGTTTTCTACGTATCTATTTCTCTTCATCTGTGGTTTACACACGATTAGAAATCATCCAGTCTGTCATTAACAGATACATCAATGTGGGTTGTATCTAGAAGAGTCTATACACATTTAATCATCGGGTTTCTCACCCAGAGCTGTGAGTTTTGGTGCCGCCGCTGAAACTCACCGCTCATAACAGAGCTGATAACAACTAGAACCATGAGAGATGTGGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGTCTGGGCATAGAACCAGACCACTTTTTCAATCCTGGGTCTGATACCTTGCTGGGTAAAATGTTAGAGGAAGATAACTGATGTTTTTACTGTGATCCAGTTACATTAAAATAACCTTTTAAAGTGTTACTTTTTTTATATTGCAGAATATTGGACACGTTTTCTCCATGCTAGTACGTAACATTTGGTAGTATATTTTCTGACCTAAAACGGTGAGTTTGGTGCCGGCTCCAAGTCTATGGCTTCCCGAGTACGAGCGCAGAGCGACAAGGCTGTCTCCTAAAGTCTCTAGTTCTGACAAGGACTCTGGACTTTCTCAACCTTTGTTACTCTGTTAGAAGTACATTCAAATACTCTTCACAGTAACTCAGCCACGGGTATAATCTAAATTATAACCAAATACATTATTGTGACTATTTTTCTAATGAAATGTAAGAGGTTTTCATCTCCAACAGTCATTTGGTTAATTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885849 False 2892 lncRNA 0.43 8 63760473 63766037
TU1885850 False 810 lncRNA 0.44 2 63763321 63767270
TU1885851 True 2554 lncRNA 0.42 5 63763321 63766037

Neighbor

gene id symbol gene type direction distance location
LOC110514319 rbm25 coding upstream 41463 63648369 ~ 63719010 (+)
plek2 plek2 coding upstream 194989 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 225770 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 260301 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 345891 63380908 ~ 63414582 (+)
ccdc177 LOC106586969 coding downstream 426239 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 434950 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 448016 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 714157 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 773015 64540285 ~ 64552914 (+)
G1648082 NA non-coding upstream 35063 63725185 ~ 63725410 (+)
G1648081 NA non-coding upstream 36212 63724050 ~ 63724261 (+)
G1648080 NA non-coding upstream 36598 63723526 ~ 63723875 (+)
G1648045 NA non-coding upstream 37089 63719069 ~ 63723384 (+)
G1648054 NA non-coding upstream 55463 63704441 ~ 63705010 (+)
G1648090 NA non-coding downstream 1036 63768306 ~ 63768855 (+)
G1648091 NA non-coding downstream 1629 63768899 ~ 63770171 (+)
G1648092 NA non-coding downstream 8049 63775319 ~ 63775586 (+)
G1648093 NA non-coding downstream 8380 63775650 ~ 63778881 (+)
G1648099 NA non-coding downstream 26272 63793542 ~ 63796313 (+)
G1647477 NA other upstream 556416 63202756 ~ 63204057 (+)
G1647411 NA other upstream 683330 63075149 ~ 63077143 (+)
G1647342 NA other upstream 741785 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1266754 62486921 ~ 62493719 (+)
G1648296 NA other downstream 360938 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1213094 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1694503 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1777107 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1811169 65578439 ~ 65582582 (+)

Expression


Co-expression Network