G1648091


Basic Information

Item Value
gene id G1648091
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63768899 ~ 63770171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885854
agATACTACCTCAGATCTCTCTGTCATTCATCCTCTAGGGGAAATGAACAGACAATCCATGGGGACTTTAAAACACCATCACCTAGTTGGTTTAGAATACGTTTTGTTGTCAACCAGGAATCAAACAAACTACAATATCTAATGAATTTAACTTGATGTTACGAAGAAAATCCTCTTCAGTATTATTGATCTCTTGAGAAGCATCTCTCCAGGCTCCTTAACAGTCTCCTCAATGTGTGTGAATTTCCCCCAGACCCATCCTGTATGGAAGTGAACGAGAGGAGGGTTTTGTATGGAAGTGAATGGGAGGAGGTTTTTGTACGGCGTCTCTATGTGAATATATCACCGTGGCCCCCTGTCCCCACAGTGTTAAAGCATCACACAAAAACACtaattctctctcattctctcatctttctcttccctccttccccccacccggtctctctctctatctctctacccatctctccttctcagtaTCTGCCTGTAGCAGCAGGTGTGTTGCTATGGGGGTTCCTGTTCCAAACGGACTCTTTCTATTTCTGTCAACAGCGCTAAGAAAAGCAGAAGGGAGGAAGCAGAAGAGAAGACAG
>TU1885855
GTTGTTTTTGTATGGAAGTGAATGGGAGGAGGTTTTTGTACGAAAGTGAATGGGAGGAGGTTTTTGTATGGAAGTGAATGGGAGGAGGTTTTTGTACGGCGTCTCTATGTGAATATATCACCGTGGCCCCCTGTCCCCACAGTGTTAAAGCATCACACAAAAACACtaattctctctcattctctcatctttctcttccctccttccccccacccggtctctctctctatctctctacccatctctccttctcagtaTCTGCCTGTAGCAGCAGGTGTGTTGCTATGGGGGTTCCTGTTCCAAACGGACTCTTTCTATTTCTGTCAACAGCGCTAAGAAAAGCAGAAGGGAGGAAGCAGAAGAGAAGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885854 False 596 lncRNA 0.44 2 63768899 63770171
TU1885855 True 371 lncRNA 0.47 3 63769208 63770171

Neighbor

gene id symbol gene type direction distance location
LOC110514319 rbm25 coding upstream 49889 63648369 ~ 63719010 (+)
plek2 plek2 coding upstream 203415 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 234196 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 268727 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 354317 63380908 ~ 63414582 (+)
ccdc177 LOC106586969 coding downstream 423338 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 432049 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 445115 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 711256 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 770114 64540285 ~ 64552914 (+)
G1648090 NA non-coding upstream 44 63768306 ~ 63768855 (+)
G1648088 NA non-coding upstream 1629 63760473 ~ 63767270 (+)
G1648082 NA non-coding upstream 43489 63725185 ~ 63725410 (+)
G1648081 NA non-coding upstream 44638 63724050 ~ 63724261 (+)
G1648080 NA non-coding upstream 45024 63723526 ~ 63723875 (+)
G1648092 NA non-coding downstream 5148 63775319 ~ 63775586 (+)
G1648093 NA non-coding downstream 5479 63775650 ~ 63778881 (+)
G1648099 NA non-coding downstream 23371 63793542 ~ 63796313 (+)
G1648105 NA non-coding downstream 40843 63811014 ~ 63811425 (+)
G1648107 NA non-coding downstream 47216 63817387 ~ 63834764 (+)
G1647477 NA other upstream 564842 63202756 ~ 63204057 (+)
G1647411 NA other upstream 691756 63075149 ~ 63077143 (+)
G1647342 NA other upstream 750211 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1275180 62486921 ~ 62493719 (+)
G1648296 NA other downstream 358037 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1210193 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1691602 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1774206 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1808268 65578439 ~ 65582582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G163082 NA non-coding CI01000030 null 6988431 ~ 6988819 (-)
mexican tetra (Astyanax mexicanus) G137010 NA non-coding NC_035911.1 CM008314.1 33447844 ~ 33450650 (-)