RNA id: TU1885855


Basic Information

Item Value
RNA id TU1885855
length 371
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G1648091
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63768899 ~ 63770171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTTTTGTATGGAAGTGAATGGGAGGAGGTTTTTGTACGAAAGTGAATGGGAGGAGGTTTTTGTATGGAAGTGAATGGGAGGAGGTTTTTGTACGGCGTCTCTATGTGAATATATCACCGTGGCCCCCTGTCCCCACAGTGTTAAAGCATCACACAAAAACACtaattctctctcattctctcatctttctcttccctccttccccccacccggtctctctctctatctctctacccatctctccttctcagtaTCTGCCTGTAGCAGCAGGTGTGTTGCTATGGGGGTTCCTGTTCCAAACGGACTCTTTCTATTTCTGTCAACAGCGCTAAGAAAAGCAGAAGGGAGGAAGCAGAAGAGAAGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885853 lncRNA upstream 353 63768306 ~ 63768855 (+) True G1648090
TU1885850 lncRNA upstream 1938 63763321 ~ 63767270 (+) False G1648088
TU1885849 lncRNA upstream 3171 63760473 ~ 63766037 (+) False G1648088
TU1885851 lncRNA upstream 3171 63763321 ~ 63766037 (+) True G1648088
TU1885843 lncRNA upstream 43798 63725185 ~ 63725410 (+) True G1648082
TU1885857 lncRNA downstream 5148 63775319 ~ 63775586 (+) True G1648092
TU1885859 lncRNA downstream 5479 63775650 ~ 63778881 (+) True G1648093
TU1885868 lncRNA downstream 23371 63793542 ~ 63794351 (+) False G1648099
TU1885869 lncRNA downstream 23371 63793542 ~ 63796313 (+) True G1648099
TU1885877 lncRNA downstream 40843 63811014 ~ 63811425 (+) True G1648105
XM_036955366.1 mRNA upstream 50198 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 50198 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 203724 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 234505 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 423338 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 423803 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 432049 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 445115 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 711256 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 377376 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 565151 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 692065 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 750520 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1275489 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 358037 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1210193 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1691602 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1774206 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1808268 65578439 ~ 65582582 (+) True G1649309

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU185241 True 280 lncRNA 0.38 2 CI01000030 6988431 ~ 6988819 (-)
bowfin (Amia calva) TU185241 False 1687 lncRNA 0.34 6 CM030141.1 231336 ~ 247005 (+)
mexican tetra (Astyanax mexicanus) TU185241 True 870 lncRNA 0.31 2 NC_035911.1 33447844 ~ 33450650 (-)