RNA id: TU1885849


Basic Information

Item Value
RNA id TU1885849
length 2892
lncRNA type antisense_over
GC content 0.43
exon number 8
gene id G1648088
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63760473 ~ 63767270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggaatgctttcaacaccttgtagagtccatgccccgacaaattcaagggggaggatgaggaaggtgttcttaatgttttgtacactcagtgaataCATGAATAATGATTCTGTTTATTGGGGACGATAAAATACATCCTCACATTGTATAGTAAGTGACAGATAATAGACAGCACACTGTACATTGTAATCACATGACAGAAATGGGTTTGttcttcgtcccaaatggcatcctattctactactttatagtgcactactttatagtgctctacttttcaccagagccttATGCCACACATGACGCCCTCCAGTCCACCGAGCTCAGCTTCCACGGGTGGCCTGGTCTCGGTCAGGGATCAATTACATCTGTTTATCTGAGGAGCGCTGAAACTTCCAAATCAGAGCCATGACGACCAGGCCGTAGAAGGTACTCTTAGCGATGAAGATGCTGTAGGCCAGCTTGGCAGTCTGGGTGCTCTTCACGTAGTACTCTGTCGTCATCCCTCCATCAGCACCTTCTTCTCCGTTCATGTGATCTGCAACATACACGTCATCGGTCCCATTGAAGAAGCGGACGGTGCAGGTGAATCTGTTAGAGGCCGTGTTCCATGTCTTGGCTGGGACTCTCAGTCTGCTGGTGATACTGTAGCGTCTGTTTTCATCCCTCAAGGCAGTGTTGTCGGTCCCCACTCCATCGGTGATGTTGGCGCCTCCATTTAACTGCCAGAACACAGTGACGTGGTCGGGGTAGAAGTCGGTGGCCACACACACCaacgtcttcttcttcttcttgtttctaTCTTCACACTCCTTAGTGGAGGGTGGAAGGACTTTGACTTTGGGTGGAGTGACAGGGATGTCTGGCTCTGCAGGGAGGAAATAGAAGAAGCTTTAACCTTTAACAGTCAATCAATGGCTCTGTTTATTGTCGACTCATACCTGAACCTGAGTGCTTTAAAAGAGATGAGACAGAAATGACACCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCAGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCAGTCCTGTCTATCTCCTTCTATAAACCGGTCCTGTCTATCTCCTTCTATAAACCggtcctgtcttTCTCCTTCTATAAACCGGTCCAGTAACATCAAGGCAACATGAACCACCAAATGCTGTGTCCCGACAAGCCCATAATAACACAACATTTCATTCAGCATCTCAGAGTGAACCTCTTTGCAACCCAGCTGCCAAAGTCATTGTCAAGACCGTCGAACATGAAAGCTATAATATACGATTATTACAGTATTTTTACAGtattattacagttttttttacagtatttttACAGTATTTTTACAGCGTCCTTACCCAGAACTGTTAGCATGGTTCCCTCTCCAAAGTAGGCAGGATAAGCACCAGAGCACACCACATACTCACAGACAGAAAACCAGGCTGATGCAAGCTAGCAAGTACTGTAGTTGCTGTAGTTTGTCTTTACCAAAGGGGGTtaatactgtagttactgtagtttgTCTTTACCAAAGGGGGTTAATACTGTAGTTGCTGTAGTTTGTCTTTACCAAAGGGGTTAGTACTGTATTTCTAAGCATGTTCATGTCAACAGAGcttaactctctttctctgttagcTCTATTCACAGGACTAAAACAAACCCCTCCTGAACATTTGCATGTTCAACTAATATACCAAATCAATCAACTAGAATTCAACCCATTATTAAAAATGATTTCAATATTGTGTATAACAAACTCTGCCTTCTCCGTGTTCCACGGAGAGATACCATGCTCTACTTTACAGGCTCTGTAGTATGACCCAGTTCTGACCCGGTTCTACTACTTTCCTTGGTCTGAACTATTAAAAGGGTTTCTTCCAACTGATCCAACACCGTGTAGATGAATTCAAACTAACGTCTGGGAGGATTTTCAACATTGTTTTCTACGTATCTATTTCTCTTCATCTGTGGTTTACACACGATTAGAAATCATCCAGTCTGTCATTAACAGATACATCAATGTGGGTTGTATCTAGAAGAGTCTATACACATTTAATCATCGGGTTTCTCACCCAGAGCTGTGAGTTTTGGTGCCGCCGCTGAAACTCACCGCTCATAACAGAGCTGATAACAACTAGAACCATGAGAGATGTGGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGGTCTGGGCATAGAACCAGACCACTTTATACCTCAATACCATGAGAGATGTAGACTGGGTCTGGGCATAGAACCAGACCACTTTTTCAATCCTGGGTCTGATACCTTGCTGGGTAAAATGTTAGAGGAAGATAACTGATGTTTTTACTGTGATCCAGTTACATTAAAATAACCTTTTAAAGTGTTACTTTTTTTATATTGCAGAATATTGGACACGTTTTCTCCATGCTAGTACGTAACATTTGGTAGTATATTTTCTGACCTAAAACGGTGAGTTTGGTGCCGGCTCCAAGTCTATGGCTTCCCGAGTACGAGCGCAGAGCGACAAGGCTGTCTCCTAAAGTCTCTAGTTCTGACAAGGACTCTGGACTTTCTCAACCTTTGTTACTCTGTTAGAAGTACATTCAAATACTCTTCACAGTAACTCAGCCACGGGTATAATCTAAATTATAACCAAATACATTATTGTGACTATTTTTCTAATGAAATGTAAGAGGTTTTCATCTCCAACAGTCATTTGGTTAATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885843 lncRNA upstream 35063 63725185 ~ 63725410 (+) True G1648082
TU1885842 lncRNA upstream 36212 63724050 ~ 63724261 (+) True G1648081
TU1885841 lncRNA upstream 36598 63723526 ~ 63723875 (+) True G1648080
TU1885792 lncRNA upstream 37089 63719069 ~ 63723384 (+) False G1648045
TU1885790 lncRNA upstream 39879 63719069 ~ 63720594 (+) False G1648045
TU1885853 lncRNA downstream 2269 63768306 ~ 63768855 (+) True G1648090
TU1885854 lncRNA downstream 2862 63768899 ~ 63770171 (+) False G1648091
TU1885855 lncRNA downstream 3171 63769208 ~ 63770171 (+) True G1648091
TU1885857 lncRNA downstream 9282 63775319 ~ 63775586 (+) True G1648092
TU1885859 lncRNA downstream 9613 63775650 ~ 63778881 (+) True G1648093
XM_036955366.1 mRNA upstream 41463 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 41463 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 194989 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 225770 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 427472 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 427937 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 436183 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 449249 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 715390 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 368641 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 556416 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 683330 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 741785 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1266754 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 362171 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1214327 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1695736 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1778340 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1812402 65578439 ~ 65582582 (+) True G1649309

Expression Profile