RNA id: XM_036955384.1


Basic Information

Item Value
RNA id XM_036955384.1
length 636
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC118941526
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 64215286 ~ 64220569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCTACAGCCAATAGAACTCTGCCTTCTACCATGATGCCCTGGAGAACTGTCCTGAATGTCCTACAGAACACTGACCTACAGAACACTGACCTACAGAACACTGTCCTACAGAACACTGTCCTACAGAACACTGACCTACAGAACACTGTCCTACAGAACACTGTCCTACAGAACACTGTCCTACAGAACACTGTCCTACAGAACGCCGACCTACAGAACACCGACCTACAAAACGCCGACCTACAGAACACCGATCTACAGAACACCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCTACAGAACGCCGACCCACAGGGCTATCCTCAATGGGCTCTTAAAGGGCTTCAGTGTATTGAACCAGAACAAGGCCTAGGTTAGAGTTATGGGTCTGTAATGTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886160 lncRNA upstream 43179 64163014 ~ 64172107 (+) True G1648317
TU1886135 lncRNA upstream 73606 64140677 ~ 64141680 (+) True G1648303
TU1886131 lncRNA upstream 76134 64138626 ~ 64139152 (+) True G1648301
TU1886123 lncRNA upstream 85859 64127711 ~ 64129427 (+) False G1648295
TU1886147 lncRNA downstream 28240 64248809 ~ 64249654 (+) False G1648310
TU1886148 lncRNA downstream 28646 64249215 ~ 64250993 (+) True G1648310
TU1886193 lncRNA downstream 32745 64253314 ~ 64254436 (+) False G1648343
TU1886194 lncRNA downstream 32745 64253314 ~ 64254436 (+) False G1648343
TU1886195 lncRNA downstream 32745 64253314 ~ 64253885 (+) False G1648343
XM_036955381.1 mRNA upstream 13552 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA upstream 13552 64193974 ~ 64201734 (+) True ccdc177
XM_036955366.1 mRNA upstream 496276 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 496276 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 649802 63557803 ~ 63565484 (+) True plek2
XM_036953840.1 mRNA downstream 260858 64481427 ~ 64482263 (+) True LOC118941371
XM_036955392.1 mRNA downstream 319716 64540285 ~ 64552366 (+) False LOC118941527
XM_036955390.1 mRNA downstream 319718 64540287 ~ 64552914 (+) False LOC118941527
XM_036955391.1 mRNA downstream 319728 64540297 ~ 64552914 (+) True LOC118941527
XM_036955403.1 mRNA downstream 750666 64971235 ~ 65020599 (+) False LOC110498417
TU1886125 other upstream 86218 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 823454 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 1011229 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 1138143 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 1196598 63016955 ~ 63018688 (+) True G1647342
TU1886551 other downstream 759795 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1241204 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1323808 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1357870 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 1380391 65600960 ~ 65602416 (+) True G1649319

Expression Profile