RNA id: TU1886195


Basic Information

Item Value
RNA id TU1886195
length 336
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1648343
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 64253314 ~ 64254436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtctgtctgcctgtgtgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtgtgtctgtctgtctgtgtgtgtctgtctgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtgtgtctgtctgtctgtctgtctgcctgtgtgtctgcctgtgtgtctgtctgtgtgtctatctgcctgtgtgtctgtctgcctgtgtgtctgtctgcctgtgtgtctgtctgtgtctgtctgtctgcctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtgtgtctgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886148 lncRNA upstream 2321 64249215 ~ 64250993 (+) True G1648310
TU1886147 lncRNA upstream 3660 64248809 ~ 64249654 (+) False G1648310
TU1886160 lncRNA upstream 81207 64163014 ~ 64172107 (+) True G1648317
TU1886135 lncRNA upstream 111634 64140677 ~ 64141680 (+) True G1648303
TU1886131 lncRNA upstream 114162 64138626 ~ 64139152 (+) True G1648301
TU1886185 lncRNA downstream 24087 64277972 ~ 64279689 (+) True G1648336
TU1886252 lncRNA downstream 65770 64319655 ~ 64320402 (+) True G1648376
TU1886257 lncRNA downstream 70742 64324627 ~ 64326794 (+) False G1648378
TU1886254 lncRNA downstream 72681 64326566 ~ 64327384 (+) True G1648378
TU1886261 lncRNA downstream 79981 64333866 ~ 64334962 (+) True G1648381
XM_036955384.1 mRNA upstream 32745 64215286 ~ 64220569 (+) True LOC118941526
XM_036955383.1 mRNA upstream 37697 64202220 ~ 64215617 (+) True LOC118941525
XM_036955381.1 mRNA upstream 51580 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA upstream 51580 64193974 ~ 64201734 (+) True ccdc177
XM_036955367.1 mRNA upstream 534304 63648369 ~ 63719010 (+) True LOC110514319
XM_036953840.1 mRNA downstream 227542 64481427 ~ 64482263 (+) True LOC118941371
XM_036955392.1 mRNA downstream 286400 64540285 ~ 64552366 (+) False LOC118941527
XM_036955390.1 mRNA downstream 286402 64540287 ~ 64552914 (+) False LOC118941527
XM_036955391.1 mRNA downstream 286412 64540297 ~ 64552914 (+) True LOC118941527
XM_036955403.1 mRNA downstream 717350 64971235 ~ 65020599 (+) False LOC110498417
TU1886125 other upstream 124246 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 861482 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 1049257 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 1176171 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 1234626 63016955 ~ 63018688 (+) True G1647342
TU1886551 other downstream 726479 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1207888 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1290492 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1324554 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 1347075 65600960 ~ 65602416 (+) True G1649319

Expression Profile