RNA id: TU1886252


Basic Information

Item Value
RNA id TU1886252
length 448
lncRNA type antisense_over
GC content 0.59
exon number 2
gene id G1648376
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 64319655 ~ 64320402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCTCCAGACAGAGGCCCTCCAGGAGACACAACGCTGCATGTTGCAGGTCTGCAGGGTGGGCGGGGTGAGGGCGTAGGCCGCACAGACAGCGTCCTCCACCACACGGGGCCCTGATGCATCATGGGAGACACACTGCACACTGCGCACCTGGGAGCCGCCGCCACACGATACAGAGCACACGTTCCATTCACCTGTCGACCAGCTGAGACGGGGAGCAGAGAGACGGGAGTCAATAACTGATTCAGAGTCGCTGCATGTGATTCAGAGTGGCTGCATGTGATTCAGAGTGTCTGCGTGTGATTCAGAGTGGCTGTCTaggtagctgctgcccactctactgtctaggtagctgctgcccactctactgtctaggtagctgctgcccactctactgtctaggtagctgctgcccactctactgtctaggtagctgctgcccactcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886185 lncRNA upstream 39966 64277972 ~ 64279689 (+) True G1648336
TU1886199 lncRNA upstream 65219 64253314 ~ 64254436 (+) False G1648343
TU1886200 lncRNA upstream 65219 64253314 ~ 64254436 (+) False G1648343
TU1886197 lncRNA upstream 65219 64253463 ~ 64254436 (+) True G1648343
TU1886198 lncRNA upstream 65770 64253314 ~ 64253885 (+) False G1648343
TU1886257 lncRNA downstream 4225 64324627 ~ 64326794 (+) False G1648378
TU1886254 lncRNA downstream 6164 64326566 ~ 64327384 (+) True G1648378
TU1886261 lncRNA downstream 13464 64333866 ~ 64334962 (+) True G1648381
TU1886295 lncRNA downstream 159542 64479944 ~ 64480429 (+) True G1648413
TU1886327 lncRNA downstream 231103 64551505 ~ 64551982 (+) True G1648438
XM_036955384.1 mRNA upstream 99086 64215286 ~ 64220569 (+) True LOC118941526
XM_036955383.1 mRNA upstream 104038 64202220 ~ 64215617 (+) True LOC118941525
XM_036955381.1 mRNA upstream 117921 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA upstream 117921 64193974 ~ 64201734 (+) True ccdc177
XM_036955367.1 mRNA upstream 600645 63648369 ~ 63719010 (+) True LOC110514319
XM_036953840.1 mRNA downstream 161025 64481427 ~ 64482263 (+) True LOC118941371
XM_036955392.1 mRNA downstream 219883 64540285 ~ 64552366 (+) False LOC118941527
XM_036955390.1 mRNA downstream 219885 64540287 ~ 64552914 (+) False LOC118941527
XM_036955391.1 mRNA downstream 219895 64540297 ~ 64552914 (+) True LOC118941527
XM_036955403.1 mRNA downstream 650833 64971235 ~ 65020599 (+) False LOC110498417
TU1886125 other upstream 190587 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 927823 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 1115598 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 1242512 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 1300967 63016955 ~ 63018688 (+) True G1647342
TU1886551 other downstream 659962 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1141371 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1223975 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1258037 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 1280558 65600960 ~ 65602416 (+) True G1649319

Expression Profile