G1648295


Basic Information

Item Value
gene id G1648295
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 64127711 ~ 64129427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1886123
GTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCGTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCGTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCGTTTGTCATGGTAACCACTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCTGTTTGTCATGGTAACCACCATCTCTATTTCTCTGTTTGTCATGGTAACCACCATCTCTATTTCAACAACAAATGTGACGGTGACAAACAGTCAGGGTTTCTTTTATAAAGATCATTTTTAACACAGCAGCAGTAACGCCTCAGTGGTTTTCATCTCAAAGACAAGGAACCAATCAGCTAGATGAAAGG
>TU1886124
GTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCGTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCGTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTCGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612438

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1886123 False 537 lncRNA 0.39 2 64127711 64129427
TU1886124 True 390 lncRNA 0.39 2 64127711 64128526

Neighbor

gene id symbol gene type direction distance location
LOC110514319 rbm25 coding upstream 408701 63648369 ~ 63719010 (+)
plek2 plek2 coding upstream 562227 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 593008 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 627539 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 713129 63380908 ~ 63414582 (+)
ccdc177 LOC106586969 coding downstream 64082 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 72793 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 85859 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 352000 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 410858 64540285 ~ 64552914 (+)
G1648281 NA non-coding upstream 38270 64088617 ~ 64089441 (+)
G1648261 NA non-coding upstream 73980 64053140 ~ 64053731 (+)
G1648253 NA non-coding upstream 89174 64038057 ~ 64038537 (+)
G1648245 NA non-coding upstream 105054 64021480 ~ 64022657 (+)
G1648230 smoc1 non-coding upstream 107837 63973979 ~ 64019874 (+)
G1648301 NA non-coding downstream 9199 64138626 ~ 64139152 (+)
G1648303 NA non-coding downstream 11250 64140677 ~ 64141680 (+)
G1648317 NA non-coding downstream 33587 64163014 ~ 64172107 (+)
G1648310 LOC106591369 non-coding downstream 119382 64248809 ~ 64250993 (+)
G1648343 NA non-coding downstream 123887 64253314 ~ 64254436 (+)
G1647477 NA other upstream 923654 63202756 ~ 63204057 (+)
G1647411 NA other upstream 1050568 63075149 ~ 63077143 (+)
G1647342 NA other upstream 1109023 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1633992 62486921 ~ 62493719 (+)
G1648608 NA other downstream 850937 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1332346 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1414950 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1449012 65578439 ~ 65582582 (+)
G1649319 NA other downstream 1471533 65600960 ~ 65602416 (+)

Expression


Co-expression Network