RNA id: TU1886124


Basic Information

Item Value
RNA id TU1886124
length 390
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1648295
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 64127711 ~ 64129427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCGTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCGTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTCGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATGGTAACCACCATCTCTATTTCTCCTTTTGTCATAGTAACCACCATCTCTATTTCTCCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886106 lncRNA upstream 38270 64088617 ~ 64089441 (+) True G1648281
TU1886086 lncRNA upstream 73980 64053140 ~ 64053731 (+) True G1648261
TU1886076 lncRNA upstream 89174 64038057 ~ 64038537 (+) True G1648253
TU1886067 lncRNA upstream 105054 64021480 ~ 64022657 (+) True G1648245
TU1886052 lncRNA upstream 149880 63973979 ~ 63977831 (+) True G1648230
TU1886131 lncRNA downstream 10100 64138626 ~ 64139152 (+) True G1648301
TU1886135 lncRNA downstream 12151 64140677 ~ 64141680 (+) True G1648303
TU1886160 lncRNA downstream 34488 64163014 ~ 64172107 (+) True G1648317
TU1886147 lncRNA downstream 120283 64248809 ~ 64249654 (+) False G1648310
TU1886148 lncRNA downstream 120689 64249215 ~ 64250993 (+) True G1648310
XM_036955366.1 mRNA upstream 408701 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 408701 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 562227 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 593008 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 64983 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 65448 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 73694 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 86760 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 352901 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 735879 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 923654 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 1050568 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 1109023 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1633992 62487001 ~ 62493719 (+) True srsf5a
TU1886551 other downstream 851838 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1333247 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1415851 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1449913 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 1472434 65600960 ~ 65602416 (+) True G1649319

Expression Profile