RNA id: TU1886052


Basic Information

Item Value
RNA id TU1886052
length 2642
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1648230
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63973979 ~ 64019874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTGGTCAAAAGAAAAAGCTTTGCTTAGTAAAGTCCTCGTGTTGTAACACACCTGTCTAAAAGATATAGTGAACTAGATGCTTGCGTTTGAGACGGCCCCTTTCTAAAAGCAGTGATATATTTTCACCAGAAGGGGTCAGTAATGTGCTCTTGTTCCCCTTAGAGAGATTCTTCTTCCCGTGTCCAAAGCAACCACATTGACACCTGTTACATACAGGAAGTCAAATGCTGTGGGAGAGGTCTACACTCCAAAAAAATTAGGGATGGTCTTACAGTTTGGGTCCTATATTAATGTGTCATAAGTACATTTAGTACCGCTATTTGTCGTGATgtgaataaaaataaaagatggtATTGCTTTTTTAGAAAGTTTAGTCCAAAAGCTCCACAATGAAACAAggaaaccaacaacagaatatgaTACATATTTACATTGAGAGCCTTCTCTCTTACTTTAGTTCCATGGGGACAGAGTATGGTTTCCAGGGATAAGTCCATATAAgcaaacaaatacacacataaacaATCACAAATAAACAAACCTCATCTTTCTGAATTTAGAAAGATAACAATTGTGGatatcgttttttttttctgtcagtctttaatttatttatttattttattttaattatgACTGTGGTGACATTTTCAGTCAGTTACGCCACTGTTGAAGTGGTTTCAGACCTGTGGTTACTGTAACATATTATTAAGCCTAATGGGGTTAGCATAACAGACCATAGACAAAACCTGACCAAAGATCAATGTGTTTCTGACATGGGAATTTCAGCCGAGGTGTATTCATTAGCgcacactgtagcaaaaaaagaaacaagagtttctattggacaaattcaggtagggtccctccccgtttcgtcctgtttggttcctagtgaatacaccccccctatctctctctgtctctgtttgccTGTTCAGTGTCTGTTCTGCCTAAATTATCTTATGGTTGATTTAAAATACAGTGCCAGGGGTTTAATGTCTAAACCTCTCATTACTATGACTCTTAAAGAAATACTTTAAACTTAACTCAGTCAGTCTCACAGTTTCCTTTCCACCCCATACCATTTTCACATAATGAATATTGCAGTTCAtatacattttacaaaaacaaaacatactGAACACATTCGCTTGTATTTGTGCACTACTTCCCTGTACATATAGCCTCTCTAGTCAGGGACCAACGTAAATAACACTTCACACGGCTACTGGACTTCTGAAGGGGTGAACTATTAGGGATTGAGTCTCTTTACTTCTGCAGCTGAACTCTGATCTTTCTTTTCGGATCCCAGGACCCCTATGAcaacagctagtcttcctggggttcatgaacacacacacaaaaacaaatacGTGATCGTCGGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATATAACTGGTGATCTAACTGGTGATCTAACTGGTGATATAACGGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATATAACTGGTGATCTAACTGGTGATCTAACTGGTGATATAACGGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACTGGTGATCTAACGGGTTGTCATTGTTTTCTGCTGGTTACAGCTACAGATGAGCAGTTTATTGTAGAGCAAACTGAGGCTGTTGATTTGCAGCCCGTTTAAAAAACCTTTGTCGTGTCATCAGCTCCTGTGTTATcaaggagacagaacagagagaacacagccTCACAGCTGACAGAGGAACATTGGCACTGACAGATAAACACTATAGGAAATTGTTTTCTGTGTTCGAAGACACATTTTAACTGTGTTTCTACCTTCGTGTGCTATTATATGAAATGACAGGATGTTGTGTTGCAAGAACGCCAAAGCAACATGGATAATGTCCCAGTGAAGACCCAGAAACATGGATAATGTCCCAGTGAAGACCCAGAAACATGGATAATGTCCCAGTGAAGACCCAGAAACATGGATAATGTCCCAGTGAAGACCCAGAAACATGGATAATGTCCCAGTGAAGACCCAAAAACGTGGATAATGTCCCAGCGAAGACCCAGAACGCCACAGCAACATGGGTAATGTCCCAGTGAAGAACCTTACAGGGGATAACTGTCTCGCTGCGATTAAACATTAAGGTTAACAATAAGAAGAAGAGTTATTATTCTTATCGAGATATTTTAAGTCACACTAGAAAATATCAAACAAATATCAAAACAGATAGAAAGTCAAACATAGGGAGGAGAAAGTGCAAATATTTTGGCGCCACTTCTTGTTTTGTTTTCTCTTGTTTTTTTTCCATTCTTCTTTTTGTACAGGAACTGCTCCATCTTTCTGCTCCATCTTTCTGCTCCATCTGTCTGCTCCATCTGTCTGCTCCATCTTTCTGCTCCATCTTTCTGCTCCATCTGTCTGCTCCATCTGTCTGCTCCATCTTTCTCTTTACTGTCAGTCAGAAAGCGCACAGATGCCTTCCCTCTGTTCTAACCCTTCCCTCTGTTCTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886037 lncRNA upstream 15120 63958620 ~ 63958859 (+) True G1648221
TU1885985 lncRNA upstream 58780 63914566 ~ 63915199 (+) True G1648174
TU1885980 lncRNA upstream 63779 63909603 ~ 63910200 (+) True G1648170
TU1885894 lncRNA upstream 102042 63868825 ~ 63871937 (+) True G1648115
TU1885885 lncRNA upstream 110379 63854961 ~ 63863600 (+) True G1648111
TU1886067 lncRNA downstream 43649 64021480 ~ 64022657 (+) True G1648245
TU1886076 lncRNA downstream 60226 64038057 ~ 64038537 (+) True G1648253
TU1886086 lncRNA downstream 75309 64053140 ~ 64053731 (+) True G1648261
TU1886106 lncRNA downstream 110786 64088617 ~ 64089441 (+) True G1648281
TU1886123 lncRNA downstream 149880 64127711 ~ 64129427 (+) False G1648295
XM_036955366.1 mRNA upstream 254969 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 254969 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 408495 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 439276 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 215678 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 216143 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 224389 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 237455 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 503596 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 582147 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 769922 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 896836 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 955291 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1480260 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 150377 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1002533 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1483942 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1566546 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1600608 65578439 ~ 65582582 (+) True G1649309

Expression Profile