RNA id: TU1885885


Basic Information

Item Value
RNA id TU1885885
length 526
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1648111
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63854961 ~ 63863600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagacagagagagtaagataGGATATTTTATTCTGTTTAACGACATTCATAGATTTGTTAGACTTCTCTTAATGAGTGGTTTAATACCTGTCACCCAGAGTGGTAGAGCTGCCAGGTGAATCAGAACTCTGATCATAGTGAAGAAGACTTGATGGAGAAGATGAATATGTTTCCTCAGTGGAGGAGAGATATGAGTGTCTCCTGGATGAAGCtctgaggtgaaaggagagggGCTGATGTAGTAGCATATGTTATTTAGGGTGGTGGTTAGTGGGAGTGTCAGAAAGTCTGTACCATAATGTTTGCTCATAGGACCTCACAGTGAACCTTTCTGATCATGACAATGAAATGAGACAGACATTATTACAAGTAGAGTTAGAGgtccccctacagtacatGATGAGACCATCACCTCTTCAGATATTATATGCTGTcctatatcaacactgggggtttagtacagctgtacttgttatattatatcaacactgggggtttagtacagctgtacttgttatattatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885884 lncRNA upstream 2329 63840663 ~ 63852632 (+) True G1648110
TU1885883 lncRNA upstream 8549 63837791 ~ 63846412 (+) True G1648109
TU1885881 lncRNA upstream 20197 63817387 ~ 63834764 (+) False G1648107
TU1885880 lncRNA upstream 20197 63817703 ~ 63834764 (+) True G1648107
TU1885877 lncRNA upstream 43536 63811014 ~ 63811425 (+) True G1648105
TU1885894 lncRNA downstream 5225 63868825 ~ 63871937 (+) True G1648115
TU1885980 lncRNA downstream 46003 63909603 ~ 63910200 (+) True G1648170
TU1885985 lncRNA downstream 50966 63914566 ~ 63915199 (+) True G1648174
TU1886037 lncRNA downstream 95020 63958620 ~ 63958859 (+) True G1648221
TU1886050 lncRNA downstream 110379 63973979 ~ 64019874 (+) False G1648230
XM_036955366.1 mRNA upstream 135951 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 135951 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 289477 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 320258 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 329909 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 330374 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 338620 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 351686 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 617827 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 463129 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 650904 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 777818 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 836273 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1361242 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 264608 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1116764 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1598173 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1680777 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1714839 65578439 ~ 65582582 (+) True G1649309

Expression Profile