G1648110


Basic Information

Item Value
gene id G1648110
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63840663 ~ 63852632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885884
acctgaaaacaggttactaacagatagacctgaaaacaggttactaacaggtagacctgaaaacaggttactaacaggtaaacctgaaaacaggttactaacaggtagacctgaaaacaggttactaacaggtagacctgaaaacaggttactaacaggtagacctgaaaacaggttactaacaggtagacctgaaaacaggttactaacaggtagacctgaaaacaggttactaacaggtagacctgaaaacaggtttgtgcacgtctgtgtgtgtggagt

Function

NR:

description
uncharacterized protein LOC110534847

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885884 True 282 lncRNA 0.41 2 63840663 63852632

Neighbor

gene id symbol gene type direction distance location
LOC110514319 rbm25 coding upstream 121653 63648369 ~ 63719010 (+)
plek2 plek2 coding upstream 275179 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 305960 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 340491 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 426081 63380908 ~ 63414582 (+)
ccdc177 LOC106586969 coding downstream 340877 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 349588 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 362654 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 628795 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 687653 64540285 ~ 64552914 (+)
G1648107 NA non-coding upstream 5899 63817387 ~ 63834764 (+)
G1648105 NA non-coding upstream 29238 63811014 ~ 63811425 (+)
G1648099 NA non-coding upstream 44350 63793542 ~ 63796313 (+)
G1648093 NA non-coding upstream 61782 63775650 ~ 63778881 (+)
G1648092 NA non-coding upstream 65077 63775319 ~ 63775586 (+)
G1648111 NA non-coding downstream 2329 63854961 ~ 63863600 (+)
G1648115 LOC106591229 non-coding downstream 16193 63868825 ~ 63871937 (+)
G1648170 NA non-coding downstream 56971 63909603 ~ 63910200 (+)
G1648174 NA non-coding downstream 61934 63914566 ~ 63915199 (+)
G1648221 NA non-coding downstream 105988 63958620 ~ 63958859 (+)
G1647477 NA other upstream 636606 63202756 ~ 63204057 (+)
G1647411 NA other upstream 763520 63075149 ~ 63077143 (+)
G1647342 NA other upstream 821975 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1346944 62486921 ~ 62493719 (+)
G1648296 NA other downstream 275576 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1127732 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1609141 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1691745 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1725807 65578439 ~ 65582582 (+)

Expression


Co-expression Network