G1648111


Basic Information

Item Value
gene id G1648111
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63854961 ~ 63863600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885885
gagacagagagagtaagataGGATATTTTATTCTGTTTAACGACATTCATAGATTTGTTAGACTTCTCTTAATGAGTGGTTTAATACCTGTCACCCAGAGTGGTAGAGCTGCCAGGTGAATCAGAACTCTGATCATAGTGAAGAAGACTTGATGGAGAAGATGAATATGTTTCCTCAGTGGAGGAGAGATATGAGTGTCTCCTGGATGAAGCtctgaggtgaaaggagagggGCTGATGTAGTAGCATATGTTATTTAGGGTGGTGGTTAGTGGGAGTGTCAGAAAGTCTGTACCATAATGTTTGCTCATAGGACCTCACAGTGAACCTTTCTGATCATGACAATGAAATGAGACAGACATTATTACAAGTAGAGTTAGAGgtccccctacagtacatGATGAGACCATCACCTCTTCAGATATTATATGCTGTcctatatcaacactgggggtttagtacagctgtacttgttatattatatcaacactgggggtttagtacagctgtacttgttatattatatc

Function

NR:

description
uncharacterized protein LOC110504270

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885885 True 526 lncRNA 0.40 2 63854961 63863600

Neighbor

gene id symbol gene type direction distance location
LOC110514319 rbm25 coding upstream 135951 63648369 ~ 63719010 (+)
plek2 plek2 coding upstream 289477 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 320258 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 354789 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 440379 63380908 ~ 63414582 (+)
ccdc177 LOC106586969 coding downstream 329909 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 338620 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 351686 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 617827 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 676685 64540285 ~ 64552914 (+)
G1648110 NA non-coding upstream 2329 63840663 ~ 63852632 (+)
G1648109 NA non-coding upstream 8549 63837791 ~ 63846412 (+)
G1648107 NA non-coding upstream 20197 63817387 ~ 63834764 (+)
G1648105 NA non-coding upstream 43536 63811014 ~ 63811425 (+)
G1648099 NA non-coding upstream 58648 63793542 ~ 63796313 (+)
G1648115 LOC106591229 non-coding downstream 5225 63868825 ~ 63871937 (+)
G1648170 NA non-coding downstream 46003 63909603 ~ 63910200 (+)
G1648174 NA non-coding downstream 50966 63914566 ~ 63915199 (+)
G1648221 NA non-coding downstream 95020 63958620 ~ 63958859 (+)
G1648230 smoc1 non-coding downstream 110379 63973979 ~ 64019874 (+)
G1647477 NA other upstream 650904 63202756 ~ 63204057 (+)
G1647411 NA other upstream 777818 63075149 ~ 63077143 (+)
G1647342 NA other upstream 836273 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1361242 62486921 ~ 62493719 (+)
G1648296 NA other downstream 264608 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1116764 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1598173 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1680777 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1714839 65578439 ~ 65582582 (+)

Expression


Co-expression Network