G1648109


Basic Information

Item Value
gene id G1648109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63837791 ~ 63846412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885883
gagacagagagagtaagataGGATATTTTATTCTGTTTAACGACATTCATAGATTTGTTAGACTTCTCTTAATGAGTGGTTTAATACCTGTCACCCAGAGTGGTAGAGCTGCCAGGTGAATCAGAACTCTGATCATAGTGAAGAAGACTTGATGGAGAAGATGAATATGTTTCCTCAGTGGAGGAGAGATATGAGTGTCTCCTGGATGAAGCtctgaggtgaaaggagagggGCTGATGTAGTAGCATATGTTATTTAGGGTGGTGGTTAGTGGGAGTGTCAGAAAGTCTGTACCATAATGTTTGCTCATAGGACCTCACAGTGAACCTTTCTGATCATGACAATGAAATGAGACAGACATTATTACAAGTAGAGTTAGAGgtccccctacagtacatGATGAGACCATCACCTCTTCAGATATTATATGCTGTcctatatcaacactgggggtttagtacagctgtacttgttatattatatcaacactgggggtttagtacagctg

Function

NR:

description
uncharacterized protein LOC110504270

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885883 True 508 lncRNA 0.41 2 63837791 63846412

Neighbor

gene id symbol gene type direction distance location
LOC110514319 rbm25 coding upstream 118781 63648369 ~ 63719010 (+)
plek2 plek2 coding upstream 272307 63557803 ~ 63565484 (+)
LOC110498294 LOC106599381 coding upstream 303088 63506786 ~ 63534703 (+)
fbln5 fbln5 coding upstream 337619 63435324 ~ 63500172 (+)
LOC110498409 LOC106592792 coding upstream 423209 63380908 ~ 63414582 (+)
ccdc177 LOC106586969 coding downstream 347097 64193509 ~ 64201734 (+)
LOC118941525 NA coding downstream 355808 64202220 ~ 64215617 (+)
LOC118941526 NA coding downstream 368874 64215286 ~ 64220569 (+)
LOC118941371 NA coding downstream 635015 64481427 ~ 64482263 (+)
LOC118941527 ERH coding downstream 693873 64540285 ~ 64552914 (+)
G1648107 NA non-coding upstream 3027 63817387 ~ 63834764 (+)
G1648105 NA non-coding upstream 26366 63811014 ~ 63811425 (+)
G1648099 NA non-coding upstream 41478 63793542 ~ 63796313 (+)
G1648093 NA non-coding upstream 58910 63775650 ~ 63778881 (+)
G1648092 NA non-coding upstream 62205 63775319 ~ 63775586 (+)
G1648111 NA non-coding downstream 8549 63854961 ~ 63863600 (+)
G1648115 LOC106591229 non-coding downstream 22413 63868825 ~ 63871937 (+)
G1648170 NA non-coding downstream 63191 63909603 ~ 63910200 (+)
G1648174 NA non-coding downstream 68154 63914566 ~ 63915199 (+)
G1648221 NA non-coding downstream 112208 63958620 ~ 63958859 (+)
G1647477 NA other upstream 633734 63202756 ~ 63204057 (+)
G1647411 NA other upstream 760648 63075149 ~ 63077143 (+)
G1647342 NA other upstream 819103 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 1344072 62486921 ~ 62493719 (+)
G1648296 NA other downstream 281796 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1133952 64980364 ~ 64980943 (+)
G1649268 NA other downstream 1615361 65461773 ~ 65463454 (+)
G1649291 NA other downstream 1697965 65544377 ~ 65545055 (+)
G1649309 NA other downstream 1732027 65578439 ~ 65582582 (+)

Expression


Co-expression Network