RNA id: TU1885880


Basic Information

Item Value
RNA id TU1885880
length 161
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1648107
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63817387 ~ 63834764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATGAGTTTCATAGCAGTGTCTCCTGTTGACTGTTGGTACCACAGTATTGTAATGTAGTCTTGAATAGCATGGTTGCAGGTGAGTTGTACATTATCTTTAGATCCTTTCAGTATTGCAATAGGAATCTGATGGACTTCGGTGCTAAGAGACTGCCCTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885877 lncRNA upstream 6278 63811014 ~ 63811425 (+) True G1648105
TU1885869 lncRNA upstream 21390 63793542 ~ 63796313 (+) True G1648099
TU1885868 lncRNA upstream 23352 63793542 ~ 63794351 (+) False G1648099
TU1885859 lncRNA upstream 38822 63775650 ~ 63778881 (+) True G1648093
TU1885857 lncRNA upstream 42117 63775319 ~ 63775586 (+) True G1648092
TU1885883 lncRNA downstream 3027 63837791 ~ 63846412 (+) True G1648109
TU1885884 lncRNA downstream 5899 63840663 ~ 63852632 (+) True G1648110
TU1885885 lncRNA downstream 20197 63854961 ~ 63863600 (+) True G1648111
TU1885894 lncRNA downstream 34061 63868825 ~ 63871937 (+) True G1648115
TU1885980 lncRNA downstream 74839 63909603 ~ 63910200 (+) True G1648170
XM_036955366.1 mRNA upstream 98693 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 98693 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 252219 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 283000 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 358745 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 359210 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 367456 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 380522 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 646663 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 425871 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 613646 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 740560 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 799015 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1323984 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 293444 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1145600 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1627009 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1709613 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1743675 65578439 ~ 65582582 (+) True G1649309

Expression Profile