RNA id: TU1885841


Basic Information

Item Value
RNA id TU1885841
length 289
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1648080
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63723526 ~ 63723875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGCCCTGTGGAGGAGAAGGGTTGAGGTTGGGGCCCTGTGGAGGAGAAGGGTTGAGTTTGGGGCCCTGTGGAAGGGCACTAGTATAAAACCTGGAACACTTGGAGCCCGTTTCCGGCATTCAGATTAAAAGCCCAGTGCTGCATGGACTAAAAACACTTTCAATTTATAATCTCTTTTTCAGTCCAGGACTGGTCTTAATTAAcctgggtctgggaaactggcccctTAACTCTGAACCGCCAAACAGCCCTTAGGTCTTCAGCATCTATGGAAAAGGACTGTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885792 lncRNA upstream 142 63719069 ~ 63723384 (+) False G1648045
TU1885790 lncRNA upstream 2932 63719069 ~ 63720594 (+) False G1648045
TU1885791 lncRNA upstream 2932 63719450 ~ 63720594 (+) True G1648045
TU1885801 lncRNA upstream 18516 63704441 ~ 63705010 (+) True G1648054
TU1885799 lncRNA upstream 31494 63691387 ~ 63692032 (+) True G1648052
TU1885842 lncRNA downstream 175 63724050 ~ 63724261 (+) True G1648081
TU1885843 lncRNA downstream 1310 63725185 ~ 63725410 (+) True G1648082
TU1885849 lncRNA downstream 36598 63760473 ~ 63766037 (+) False G1648088
TU1885850 lncRNA downstream 39446 63763321 ~ 63767270 (+) False G1648088
TU1885851 lncRNA downstream 39446 63763321 ~ 63766037 (+) True G1648088
XM_036955366.1 mRNA upstream 4516 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA upstream 4516 63648369 ~ 63719010 (+) True LOC110514319
XM_036955363.1 mRNA upstream 158042 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 188823 63506786 ~ 63534703 (+) False LOC110498294
XM_036955381.1 mRNA downstream 469634 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 470099 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 478345 64202220 ~ 64215617 (+) True LOC118941525
XM_036955384.1 mRNA downstream 491411 64215286 ~ 64220569 (+) True LOC118941526
XM_036953840.1 mRNA downstream 757552 64481427 ~ 64482263 (+) True LOC118941371
TU1885128 other upstream 331694 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 519469 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 646383 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 704838 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1229807 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 404333 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1256489 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1737898 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1820502 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1854564 65578439 ~ 65582582 (+) True G1649309

Expression Profile