XLOC_037682 (tra2b)


Basic Information

Item Value
gene id XLOC_037682
gene name tra2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12579077 ~ 12595003 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073996
TTCTAAATAAAGCTTCTACGGCGAGAAAGGCGTTCATTTACAGACGTCTggtttgtgtgtgcgtttgagCACTACTTGTGTGTTGTCCTAATCATTTCTCTTGCATTGTAATTATTGCAGCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGGAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAGGTCTCGTTCCCATCGAAGTTCTCGAAGACATTACAGTCGATCACGTTCACGCTCTTATTCTCGCCGAAGACGTTCACGCAGCCGCTCATACAGCAGTGAATATCACCGCCGCCGCAGCAGTCACAGTCACTCTCCCATGTCCAACCGCAGACGACATATTGGTGACCGGGCAAATCCAGACCCAAACTGCTGCCTGGGAGTGTTCGGATTGAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTTCTCTAAATATGGCCCTCTGAGTGATGTGTGCATTGTGTACGACCAGCAGTCACGGCGCTCCAGGGGTTTTGCTTTTGTCTACTTTGAGAACAGAGAAGATTCAAAAGAGGCTAAAGAGCGTGCAAATGGTATGGAGCTTGATGGCCGAAGAATCAGGGTAGACTACTCCATTACCAAGAGGCCACACACACCTACTCCTGGAATATATATGGGCAGACCAACATATGGTGGTGGGCCAAGTGTAAGCCGTCGGCGGGATAGCTATGATCGAGGGTATGAACGTGGATATGATCGCTATGAAGACAGAGACTACTACAACAACAGGAGAAGATCCCCGTCTCCTTACTACAGCCGAGGACCGTACAGGTCAAGATCACGCTCTCGCTCTTACTCTCCTCGTCATTATTGAAGTGAAGTTCAGCTCCTCTCTTGAAGATGACTACAATATTGTTGATGACGTAGATGTTTATTTCTGGTGGCATGAGTCTCGATGTACTTTTCCTTCGATTTTCTTGCCTAAAGGTTTCATGTGTCTTTGACTGATCTGGATGTTTCATTAGTGGGATGAATATTTTTGCACTGTTGttgagtttttgttcattttttttttttttcgttcccGATCTGATGCTAAACTTGCGTTTGTTTTATAATATGATGAAGTGTTCGGCTCACATCCCCGTATGCTTTTTCGCATTTTAAGCTTAGCAGTGGTCTTGCAATAAACTGCTTTATACCTCCCA
>TCONS_00073997
TCAAGAATAGCCACTCCTCATTTGCCTCCTAGGTGATCATGCAAATTTTGTGGAGATTTCACAAAGTCGTTGTATGTAGTCTGTATATAATCGaaacaaatatttacaaagaTTAAATCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGGAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAGGTCTCGTTCCCATCGAAGTTCTCGAAGACATTACAGTCGATCACGTTCACGCTCTTATTCTCGCCGAAGACGTTCACGCAGCCGCTCATACAGCAGTGAATATCACCGCCGCCGCAGCAGTCACAGTCACTCTCCCATGTCCAACCGCAGACGACATATTGGTGACCGGGCAAATCCAGACCCAAACTGCTGCCTGGGAGTGTTCGGATTGAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTTCTCTAAATATGGCCCTCTGAGTGATGTGTGCATTGTGTACGACCAGCAGTCACGGCGCTCCAGGGGTTTTGCTTTTGTCTACTTTGAGAACAGAGAAGATTCAAAAGAGGCTAAAGAGCGTGCAAATGGTATGGAGCTTGATGGCCGAAGAATCAGGGTAGACTACTCCATTACCAAGAGGCCACACACACCTACTCCTGGAATATATATGGGCAGACCAACATATGGTGGTGGGCCAAGTGTAAGCCGTCGGCGGGATAGCTATGATCGAGGGTATGAACGTGGATATGATCGCTATGAAGACAGAGACTACTACAACAACAGGAGAAGATCCCCGTCTCCTTACTACAGCCGAGGACCGTACAGGTCAAGATCACGCTCTCGCTCTTACTCTCCTCGTCATTATTGA
>TCONS_00073998
GACGTCTggtttgtgtgtgcgtttgagCACTACTTGTGTGTTGTCCTAATCATTTCTCTTGCATTGTAATTATTGCAGCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGCCTATTCTGTTGCCCTAACCTGACTGGGATGTGGTTGGTTTAGGAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAGGTCTCGTTCCCATCGAAGTTCTCGAAGACATTACAGTCGATCACGTTCACGCTCTTATTCTCGCCGAAGACGTTCACGCAGCCGCTCATACAGCAGTGAATATCACCGCCGCCGCAGCAGTCACAGTCACTCTCCCATGTCCAACCGCAGACGACATATTGGTGACCGGGCAAATCCAGACCCAAACTGCTGCCTGGGAGTGTTCGGATTGAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTTCTCTAAATATGGCCCTCTGAGTGATGTGTGCATTGTGTACGACCAGCAGTCACGGCGCTCCAGGGGTTTTGCTTTTGTCTACTTTGAGAACAGAGAAGATTCAAAAGAGGCTAAAGAGCGTGCAAATGGTATGGAGCTTGAT
>TCONS_00073999
TTTACAGACGTCTggtttgtgtgtgcgtttgagCACTACTTGTGTGTTGTCCTAATCATTTCTCTTGCATTGTAATTATTGCAGCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGgTTAAGGTTGGAAGAAGAGAAATCTGGATGAAGTCAAATGTCAAGTTGTTAATGCGAATAATTTGAAGCTGAATTTTCAGTGCATGCTAATATTGCGGAGCAAAAGAAGTTCCCATATAGCATTTTTGGGCAGTGAGAGAAATGGGGGAAGAGGATTGAAGTCAGAAATGAAATTGAGActgaagaaagaagaaaagatgTGTTATGAAGTTAAGATCAGAAGTTATCTGGGATAAGATCGCAGCGCTAAGTAACTCTTAGAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAGGTCTCGTTCCCATCGAAGTTCTCGAAGACATTACAGTCGATCACGTTCACGCTCTTATTCTCGCCGAAGACGTTCACGCAGCCGCTCATACAGCAGTGAATATCACCGCCGCCGCAGCAGTCACAGTCACTCTCCCATGTCCAACCGCAGACGACATATTGGTGACCGGGCAAATCCAGACCCAAACTGCTGCCTGGGAGTGTTCGGATTGAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTT
>TCONS_00074000
gtgtgtgcgtttgagCACTACTTGTGTGTTGTCCTAATCATTTCTCTTGCATTGTAATTATTGCAGCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGgTTAAGGTTGGAAGAAGAGAAATCTGGATGAAGTCAAATGTCAAGTTGTTAATGCGAATAATTTGAAGCTGAATTTTCAGTGCATGCTAATATTGCGGAGCAAAAGAAGTTCCCATATAGCATTTTTGGGCAGTGAGAGAAATGGGGGAAGAGGATTGAAGTCAGAAATGAAATTGAGActgaagaaagaagaaaagatgTGTTATGAAGTTAAGATCAGAAGTTATCTGGGATAAGATCGCAGCGCTAAGTAACTCTTATCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAGGTCTCGTTCCCATCGAAGTTCTCGAAGACATTACAGTCGATCACGTTCACGCTCTTATTCTCGCCGAAGACGTTC
>TCONS_00074001
AAGAGTGGGAGCGCTAGTTTCTAAATAAAGCTTCTACGGCGAGAAAGGCGTTCATTTACAGACGTCTggtttgtgtgtgcgtttgagCACTACTTGTGTGTTGTCCTAATCATTTCTCTTGCATTGTAATTATTGCAGCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGgTTAAGGTTGGAAGAAGAGAAATCTGGATGAAGTCAAATGTCAAGTTGTTAATGCGAATAATTTGAAGCTGAATTTTCAGTGCATGCTAATATTGCGGAGCAAAAGAAGTTCCCATATAGCATTTTTGGGCAGTGAGAGAAATGGGGGAAGAGGATTGAAGTCAGAAATGAAATTGAGActgaagaaagaagaaaagatgTGTTATGAAGTTAAGATCAGAAGTTATCTGGGATAAGATCGCAGCGCTAAGTAACTCTTAGTATGTTTGTCCCATGCGTGCATGCATCAATCTTCTTTTGTCCATTTTGTATTGCAATAGTCACTATTCTGCAGTAGCATGAGAGATTTACAGCTAGATATTTTTCACACATAATCTGATGATGCATTAATTTCAAACCACTACAAATTCTTTTCTTGTAAAATTGTTTAAGCATTAGTTTATGTACAGTACTTGCAGTGAAAAGGCCACCATCACTGCGTATTATCATAGTCTTGATTgacttatttatatacatttttataattatatacacaCAATTTTTGTCCCTGTGAGCCTATTCTGTTGCCCTAACCTGACTGGGATGTGGTTGGTTTAGGAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGC

Function

symbol description
tra2b Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in brain. Orthologous to human TRA2B (transformer 2 beta homolog).

GO:

id name namespace
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1094 Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in brain. Orthologous to human TRA2B (transformer 2 beta homolog).

Ensembl:

ensembl_id ENSDARG00000002168

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073996 False 1312 mRNA 0.47 8 12579077 12594759
TCONS_00073997 False 976 mRNA 0.50 9 12579411 12595003
TCONS_00073998 False 712 processed_transcript 0.51 5 12582266 12594717
TCONS_00073999 False 793 processed_transcript 0.47 5 12584643 12594723
TCONS_00074000 False 598 processed_transcript 0.44 4 12584903 12594705
TCONS_00074001 True 918 lncRNA 0.40 2 12589956 12594777

Neighbor

gene id symbol gene type direction distance location
XLOC_037681 igf2bp2a coding downstream 3301 12468500 ~ 12575776 (-)
XLOC_037680 ehhadh coding downstream 135351 12428226 ~ 12443726 (-)
XLOC_037679 C1H3orf70 coding downstream 154283 12403289 ~ 12424794 (-)
XLOC_037678 nup35 coding downstream 177206 12259469 ~ 12401871 (-)
XLOC_037677 NA coding downstream 407292 12076843 ~ 12171785 (-)
XLOC_037683 tspearb coding upstream 1035 12596038 ~ 12625385 (-)
XLOC_037684 sumo3b coding upstream 53702 12648705 ~ 12652984 (-)
XLOC_037685 pttg1ipb coding upstream 60275 12655278 ~ 12659140 (-)
XLOC_037686 myo10l3 coding upstream 69370 12664373 ~ 12811936 (-)
XLOC_037687 ankzf1 coding upstream 239411 12834414 ~ 12888157 (-)
XLOC_037675 NA non-coding downstream 723772 11822379 ~ 11855305 (-)
XLOC_037673 NA non-coding downstream 924046 11595987 ~ 11655031 (-)
XLOC_037671 NA non-coding downstream 1006723 11571312 ~ 11572354 (-)
XLOC_037667 BX000444.1 non-coding downstream 1732528 10845918 ~ 10846549 (-)
XLOC_037688 NA non-coding upstream 294895 12889898 ~ 12903013 (-)
XLOC_037689 NA non-coding upstream 350554 12945557 ~ 12948957 (-)
XLOC_037690 NA non-coding upstream 359564 12954567 ~ 12956248 (-)
XLOC_037691 NA non-coding upstream 502218 13097221 ~ 13120257 (-)
XLOC_037692 NA non-coding upstream 651021 13246024 ~ 13246524 (-)

Expression


Co-expression Network