XLOC_000423 (mmaa)


Basic Information

Item Value
gene id XLOC_000423
gene name mmaa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35956435 ~ 35970259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000720
tttaaaaaaaattgtcatccGCTTACACGACCTCAGCAGCAGCGCTGGTGTCACAGCTGACATGGAGAAACCACATGAGATACATGACTAAAGATTTCTCAAATTCAGCAATATCGCTAAATGAAGATAGAACCTGGAGTGTAGATGGAATTAAGGTTAAGATATGGTGTCAGAAAAGTTGaagttctgctaagaacagaaaaaaagaaagatgggTCCATCTAGAGTTTTTTCAATTCTTCACCATGTTGCTGCTTTTTCTCCTATACACAGTACAACGGCATTAAGACATTCCCTTTGTAAGCCTTCTGTAAATCTGCGCTATGCCTCCCTCTGCACCCTCCAACAGACCAGATCTCTTTCAACAGAGACCGCCATAAGCCATCACATTTCAGACCTGACTGACAGGGAGAAAAGACTACTAACTAAACTTTATGATGGACTTATTGGGGGTCGAAGGGCAGCTCTTGCTGAATGTATAACCCTTGTAGAGACCCAGCATCCGAGGAAGAAAGAGTTAGCCCAGGTTCTGCTTCAAAGAGTGCTGGCCTTCCGTCAGGAGCAGGAGAGACGCAGCGGTGGAAAGCCAGTGGCCTTCAGAGTTGGACTGTCTGGTCCTCCTGGTGCTGGAAAGTCTTCATTTATTGAAGTCATCGGGAAGATGCTGACAGGAAAAGGACACAAAGTGTCAGTACTTGCTGTGGATCCATCTTCTTGTACAACTGGAGGTTCACTGATGGGGGACAAAACACGGATGACGGAGCTCTCCAGAGACATGAACGCTTACATCCGACCTTCTCCCACATCAGGAACCCTTGGCGGTGTGACGAGAACCACCAACGAAGCCATCGTTCTTTGTGAGGGTGCAGGCTATGACATTGTTTTAGTGGAAACAGTAGGTGTTGGTCAGTCTGAGTTTGCTGTGGCTGACATGGTGGATATGTTCGTTCTTCTAATTCCACCAGCAGGGGGCGATGAACTACAGggaaTCAAAAGAGGAATTATTGAGATGGCTGACTTGGTGGTGGTTACAAAATCAGATGGCGAATTGGTTGTTCCAGCAAGGAAGATACAAGCAGAATACACCAGTGCTCTGAAGCTGCTTCGAAAGAAGTCCAAAGTCTGGAAACCAAAGGTGGTGCGCATATCCTCTCAGACGGGGCAGGGTGTGCCGGAGCTTTGGGAAACCATGCTGCACTTCCGGGAGGAGATGCTGAGCAGCGGGGAGCTCCAAGTCCGACGGCAGACTCAGCAGAAGGTGTGGATGTGGAGTCTGATCCAGGAGAACGCTCTCCGCCACTTCCAACAGCATCCAGCGGTGCGTGCAGAGCTCCCAGAGCTGGAGAGCAGAGTCACGTGTGGAGAAATCTCACCTGGACTCGCTGCTGACCTGCTGCTCAAAGttttcacagacacacagtgATGGAGGGGCTGCTTTATGGGGGAAAAACTGGTTGTTTTAGGGATTACTTGAATGGAAAAATCATTGCAAGATTGAATCTTACATATGTTGCTTCACTTGATTTTAAAGGATTTTAATTACTGGTGACTTTTGATGATTATGTTCTAATATTGTCTTAGTGTTATCTTGTCCTGTAGATGAGATTAAATGACTAATGTGTTGGATTTTTTGAGGAATATGTACATTTTGGGACTTGACAATAAATTGTAATTTtcttctgat
>TCONS_00003089
ACGACCTCAGCAGCAGCGCTGGTGTCACAGCTGACATGGAGAAACCACATGAGATACATGACTAAAGATTTCTCAAATTCAGCAATATCGCTAAATGAAGATAGAACCTGGAGTGTAGATGGAATTAAGGTTAAGATATGGTGTCAGAAAAGTTGaagttctgctaagaacagaaaaaaagaaagatgggTCCATCTAGAGTTTTTTCAATTCTTCACCATGTTGCTGCTTTTTCTCCTATACACAGTACAACGGCATTAAGACATTCCCTTTGTAAGCCTTCTGTAAATCTGCGCTATGCCTCCCTCTGCACCCTCCAACAGACCAGATCTCTTTCAACAGAGACCGCCATAAGCCATCACATTTCAGACCTGACTGACAGGGAGAAAAGACTACTAACTAAACTTTATGATGGACTTATTGGGGGTCGAAGGGCAGCTCTTGCTGAATGTATAACCCTTGTAGAGACCCAGCATCCGAGGAAGAAAGAGTTAGCCCAGGTTCTGCTTCAAAGAGTGCTGGCCTTCCGTCAGGAGCAGGAGAGACGCAGCGGTGGAAAGCCAGTGGCCTTCAGAGTTGGACTGTCTGGTCCTCCTGGTGCTGGAAAGTCTTCATTTATTGAAGTCATCGGGAAGATGCTGACAGGAAAAGGACACAAAGTGTCAGTACTTGCTGTGGATCCATCTTCTTGTACAACTGGAGGTTCACTGATGGGGGACAAAACACGGATGACGGAGCTCTCCAGAGACATGAACGCTTACATCCGACCTTCTCCCACAT
>TCONS_00000721
ACGACCTCAGCAGCAGCGCTGGTGTCACAGCTGACATGGAGAAACCACATGAGATACATGACTAAAGATTTCTCAAATTCAGCAATATCGCTAAATGAAGATAGAACCTGGAGTGTAGATGGAATTAAGGTTAAGATATGGTGTCAGAAAAGTTGaagttctgctaagaacagaaaaaaagaaagatgggTCCATCTAGAGTTTTTTCAATTCTTCACCATGTTGCTGCTTTTTCTCCTATACACAGTACAACGGCATTAAGACATTCCCTTTGTAAGCCTTCTGTAAATCTGCGCTATGCCTCCCTCTGCACCCTCCAACAGACCAGATCTCTTTCAACAGAGACCGCCATAAGCCATCACATTTCAGACCTGACTGACAGGGAGAAAAGACTACTAACTAAACTTTATGATGGACTTATTGGGGGTCGAAGGGCAGCTCTTGCTGAATGTATAACCCTTGTAGAGACCCAGCATCCGAGGAAGAAAGAGTTAGCCCAGGTTCTGCTTCAAAGAGTGCTGGCCTTCCGTCAGGAGCAGGAGAGACGCAGCGGTGGAAAGCCAGTGGCCTTCAGAGTTGGTCAGTAAGGTGATGTGAACAATAGGAGTGAGGTTGCTGTTTGTGTGAATGTCCTCCTCAGTCCTTATATTGCCTCTCCGTATGTGTGACTTCAGGACTGTCTGGTCCTCCTGGTGCTGGAAAGTCTTCATTTATTGAAGTCATCGGGAAGATGCTGACAGGAAAAGGACACAAAGTGTCAGTACTTGCTGTGGATCCATCTTCTTGTACAACTGGAGGTTCACTGATGGGGGACAAAACACGGATGACGGAGCTCTCCAGAGACATGAACGCTTACATCCGACCTTCTCCCACAT
>TCONS_00000722
GACATGGAGAAACCACATGAGATACATGACTAAAGATTTCTCAAATTCAGCAATATCGCTAAATGAAGATAGAACCTGGAGTGTAGATGGAATTAAGGTTAAGATATGGTGTCAGAAAAGTTGaagttctgctaagaacagaaaaaaagaaagatgggTCCATCTAGAGTTTTTTCAATTCTTCACCATGTTGCTGCTTTTTCTCCTATACACAGTACAACGGCATTAAGACATTCCCTTTGTAAGCCTTCTGTAAATCTGCGCTATGCCTCCCTCTGCACCCTCCAACAGACCAGATCTCTTTCAACAGAGACCGCCATAAGCCATCACATTTCAGACCTGACTGACAGGGAGAAAAGACTACTAACTAAACTTTATGATGGACTTATTGGGGGTCGAAGGGCAGCTCTTGCTGAATGTATAACCCTTGTAGAGACCCAGCATCCGAGGAAGAAAGAGTTAGCCCAGGTTCTGCTTCAAAGAGTGCTGGCCTTCCGTCAGGAGCAGGAGAGACGCAGCGGTGGAAAGCCAGTGGCCTTCAGAGTTGGACTGTCTGGTCCTCCTGGTGCTGGAAAGTCTTCATTTATTGAAGTCATCGGGAAGATGCTGACAGGAAAAGGACACAAAGTGTCAGTACTTGCTGTGGATCCATCTTCTTGTACAACTGGAGGTGAACAGACAATCAAATTGTCATCTAAATATGATGGTGTCGGTTTTGTTTTAGTACTTGATGTTAAACATAGTTATTTTTTAGGTTTCTGTGATatagagaataaaaaaaagaacagca
>TCONS_00000723
TTTCTCAAATTCAGCAATATCGCTAAATGAAGATAGAACCTGGAGTGTAGATGGAATTAAGGTTAAGATATGGTGTCAGAAAAGTTGaagttctgctaagaacagaaaaaaagaaagatgggTCCATCTAGAGTTTTTTCAATTCTTCACCATGTTGCTGCTTTTTCTCCTATACACAGTACAACGGCATTAAGACATTCCCTTTGTAAGCCTTCTGTAAATCTGCGCTATGCCTCCCTCTGCACCCTCCAACAGACCAGATCTCTTTCAACAGAGACCGCCATAAGCCATCACATTTCAGACCTGACTGACAGGGAGAAAAGACTACTAACTAAACTTTATGATGGACTTATTGGGGGTCGAAGGGCAGCTCTTGCTGAATGTATAACCCTTGTAGAGACCCAGCATCCGAGGAAGAAAGAGTTAGCCCAGGTTCTGCTTCAAAGAGTGCTGGCCTTCCGTCAGGAGCAGGAGAGACGCAGCGGTGGAAAGCCAGTGGCCTTCAGAGTTGGTTCACTGATGGGGGACAAAACACGGATGACGGAGCTCTCCAGAGACATGAACGCTTACATCCGACCTTCTCCCACATCAGGAACCCTTGGCGGTGTGACGAGAACCACCAACGAAGCCATCGTTCTTTGTGAGGGTGCAGGCTATGACATTGTTTTAGTGGAAACAGTAGGT

Function

symbol description
mmaa Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in methylmalonic acidemia cblA type. Orthologous to human MMAA (metabolism of cobalamin associated A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-15 Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in methylmalonic acidemia cblA type. Orthologous to human MMAA (metabolism of cobalamin associated A).

Ensembl:

ensembl_id ENSDARG00000060383

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000720 False 1684 mRNA 0.46 7 35956435 35970259
TCONS_00003089 False 780 lncRNA 0.46 4 35956461 35963062
TCONS_00000721 False 875 lncRNA 0.46 3 35956461 35963062
TCONS_00000722 False 790 lncRNA 0.42 3 35956493 35960055
TCONS_00000723 True 684 mRNA 0.46 4 35956529 35963260

Neighbor

gene id symbol gene type direction distance location
XLOC_000422 BX276105.1 coding upstream 2122 35949269 ~ 35954313 (+)
XLOC_000421 NA coding upstream 57998 35896392 ~ 35898437 (+)
XLOC_000420 si:ch211-194g2.4 coding upstream 88492 35862550 ~ 35867943 (+)
XLOC_000419 hhip coding upstream 120572 35790082 ~ 35835863 (+)
XLOC_000418 gab1 coding upstream 346776 35494837 ~ 35609659 (+)
XLOC_000424 zgc:152968 coding downstream 15554 35985813 ~ 36002774 (+)
XLOC_000425 BX324156.1 coding downstream 184002 36154261 ~ 36154377 (+)
XLOC_000426 lsm6 coding downstream 224502 36194761 ~ 36204000 (+)
XLOC_000427 pou4f2 coding downstream 466677 36436936 ~ 36440301 (+)
XLOC_000428 ednraa coding downstream 642401 36612660 ~ 36702355 (+)
XLOC_000415 NA non-coding upstream 862923 35034294 ~ 35093512 (+)
XLOC_000414 NA non-coding upstream 1095378 34857368 ~ 34861057 (+)
XLOC_000408 NA non-coding upstream 1501988 34450659 ~ 34454447 (+)
XLOC_000407 CR848003.1 non-coding upstream 1556081 34400240 ~ 34400354 (+)
XLOC_000431 NA non-coding downstream 995741 36966000 ~ 36966282 (+)
XLOC_000432 FO704615.1 non-coding downstream 1153383 37123642 ~ 37123772 (+)
XLOC_000436 NA non-coding downstream 1620999 37591258 ~ 37638367 (+)
XLOC_000439 NA non-coding downstream 1863088 37833347 ~ 37834392 (+)

Expression


Co-expression Network