Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000722 |
| length | 790 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_000423 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 35956435 ~ 35970259 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005575 | cellular_component | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070928-15 | Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in methylmalonic acidemia cblA type. Orthologous to human MMAA (metabolism of cobalamin associated A). |
| ensembl_id | ENSDART00000140144 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003088 | lncRNA | upstream | 58056 | 35896392 ~ 35898437 (+) | True | XLOC_000421 |
| TCONS_00003086 | lncRNA | upstream | 862981 | 35034294 ~ 35093512 (+) | False | XLOC_000415 |
| TCONS_00003087 | lncRNA | upstream | 862981 | 35076467 ~ 35093512 (+) | True | XLOC_000415 |
| TCONS_00002853 | lncRNA | upstream | 1095436 | 34857368 ~ 34861057 (+) | False | XLOC_000414 |
| TCONS_00000727 | lncRNA | downstream | 33242 | 35993297 ~ 35994209 (+) | True | XLOC_000424 |
| TCONS_00002855 | lncRNA | downstream | 691025 | 36651080 ~ 36657815 (+) | False | XLOC_000428 |
| TCONS_00002856 | lncRNA | downstream | 1005945 | 36966000 ~ 36966282 (+) | True | XLOC_000431 |
| TCONS_00000757 | lncRNA | downstream | 1252181 | 37212236 ~ 37259712 (+) | False | XLOC_000433 |
| TCONS_00000758 | lncRNA | downstream | 1324520 | 37284575 ~ 37292181 (+) | True | XLOC_000433 |
| TCONS_00000719 | mRNA | upstream | 2180 | 35949269 ~ 35954313 (+) | True | XLOC_000422 |
| TCONS_00000718 | mRNA | upstream | 88550 | 35862550 ~ 35867943 (+) | True | XLOC_000420 |
| TCONS_00000716 | mRNA | upstream | 120630 | 35790082 ~ 35835863 (+) | False | XLOC_000419 |
| TCONS_00000713 | mRNA | upstream | 346834 | 35494837 ~ 35609659 (+) | False | XLOC_000418 |
| TCONS_00000724 | mRNA | downstream | 25758 | 35985813 ~ 36002774 (+) | False | XLOC_000424 |
| TCONS_00000725 | mRNA | downstream | 25838 | 35985893 ~ 35998397 (+) | False | XLOC_000424 |
| TCONS_00000726 | mRNA | downstream | 25864 | 35985919 ~ 35990380 (+) | False | XLOC_000424 |
| TCONS_00000729 | mRNA | downstream | 234706 | 36194761 ~ 36204000 (+) | False | XLOC_000426 |
| TCONS_00000730 | mRNA | downstream | 234726 | 36194781 ~ 36203999 (+) | True | XLOC_000426 |
| TCONS_00000717 | other | upstream | 153409 | 35790892 ~ 35803084 (+) | True | XLOC_000419 |
| TCONS_00000714 | other | upstream | 441220 | 35494904 ~ 35515273 (+) | False | XLOC_000418 |
| TCONS_00000704 | other | upstream | 1250023 | 34695514 ~ 34706470 (+) | False | XLOC_000411 |
| TCONS_00000699 | other | upstream | 1267851 | 34685445 ~ 34688642 (+) | False | XLOC_000410 |
| TCONS_00000695 | other | upstream | 1556139 | 34400240 ~ 34400354 (+) | True | XLOC_000407 |
| TCONS_00000728 | other | downstream | 194206 | 36154261 ~ 36154377 (+) | True | XLOC_000425 |
| TCONS_00000735 | other | downstream | 705488 | 36665543 ~ 36690899 (+) | False | XLOC_000428 |
| TCONS_00000740 | other | downstream | 768242 | 36728297 ~ 36746569 (+) | True | XLOC_000429 |
| TCONS_00000744 | other | downstream | 1163587 | 37123642 ~ 37123772 (+) | True | XLOC_000432 |
| TCONS_00000769 | other | downstream | 2036404 | 37996459 ~ 37996577 (+) | True | XLOC_000440 |
