RNA id: TCONS_00000719


Basic Information

Item Value
RNA id TCONS_00000719
length 1533
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_000422
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35949269 ~ 35954313 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTCCCCACTAGGTGGCGGAAACTCAGTAAAGCTGCCAAAGTTtgcaagaagaagaagaagaagaagaagaagaagaagaagaacaacaacaacaacaacaacaactgcattGCGTTGATGAAATACATGGCTGTAGAAGAAGCGactttgtaaaaaatgttttactgcTTAGTTAATAAAGAAGTTACGTGTTTGTTTAGACGGAAGACTTGTGTTTGTCTGCAATTCAGATAACGTTAgcggacattttttttattacgcttGAAAACTAAGCTAACGCTTCGGATTCTTCAAGAACAGTATTTTCCAGGTGTAACGCCAACTTACTCCTTAATTTTCCTTAATTTCGAAGACGTCATGCATACTAGAGAGATCATATATTGTGCTACACAAATCGAAAGGTTGCACGAGGACGGCAGTTATGAAGATGTTATATCATTACTGACTGAACTCGACATCACTTCTGTCACGTTAGAGCAGATTCAGACAACAGATATTGTAAAAGTTCTTTACAGACTGCTTAAGTCCTGTCCTGTTTTGAGTgctaaaacaaaagcaaagagCTTGCTGACAAAATGGAAGAAGTTGTACAATTTGTCACATGCAATATTActcaaaaataatgacaaaaacacaCGGGAGGACAAGGAATTAGAGACGCATAACATGTCTAATGTTGAGTTACCATTGGAATTTCCATTTTTAACCAATGGATTTCAGCCCTTACATGAAAAAGTGAACGAGAGTCAAGCATGTAACACAAAGCAGCTTGATATAACAAAGGATGCAAACCAgggaaaatgtaataatttatgcTTTAATGCATCTTCTAAAAAACTTTGTATAGCAACTGAATCTGCAGAATCTCTCCAGACACAGCTTGAGCAAGAGAGCATTACTCCAGCCGTGGAATCAAATAGATCTGATACAGAGGAAAGTGCTCAAACCTCAGTTCCTCAAAACACAAATCAGCACACAACTAACTGTGACTCTACAGCACTGAGATCCAAATGTGTCCATCTGATCCTTCAGGCTCTTAGCACAAACCAACAAACAGACCCAGGTCATATGAACAAGCTCAAAGCCCTTGCTGAGAACATTGAGTTGCATGTTCATGCTCTTCATGGACGAAACCAGCATAAGTACAAGTTTCATATTAGGAGCAAGGTTGCCAACCTAAAGAACCCAAACAACCCCCACCTACGCCAAGGCCTTATTTCAGGACAACTGACTCCAGATGCATTTGCCCAGATGTCTGTAGAGGAAATGGCAGGTATCCTGAACTAGTCCTGGAGAAGAATCTGGTCAAGAGGAGTCCTCTCTTCGGGATCAGGATGATTCTGAAAGACGGGAATAACAATTGATAATTAGTTTAAACATTCTTTACACCTAAAGACAGCATTTTAGATGTCTGAGCCATATGGCTTTGTAAGATACAATTACTTCTTTTGTACAATTTACAATTacatttgttgaatttttttaaagatctcATCTTTCGACAAGGATGGCAGATACTGTACCACAGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003088 lncRNA upstream 50832 35896392 ~ 35898437 (+) True XLOC_000421
TCONS_00003086 lncRNA upstream 855757 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA upstream 855757 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00002853 lncRNA upstream 1088212 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002852 lncRNA upstream 1089946 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00003089 lncRNA downstream 2148 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000721 lncRNA downstream 2148 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000722 lncRNA downstream 2180 35956493 ~ 35960055 (+) False XLOC_000423
TCONS_00000727 lncRNA downstream 38984 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00002855 lncRNA downstream 696767 36651080 ~ 36657815 (+) False XLOC_000428
TCONS_00000718 mRNA upstream 81326 35862550 ~ 35867943 (+) True XLOC_000420
TCONS_00000716 mRNA upstream 113406 35790082 ~ 35835863 (+) False XLOC_000419
TCONS_00000713 mRNA upstream 339610 35494837 ~ 35609659 (+) False XLOC_000418
TCONS_00000715 mRNA upstream 341334 35495368 ~ 35607935 (+) True XLOC_000418
TCONS_00000710 mRNA upstream 458264 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000720 mRNA downstream 2122 35956435 ~ 35970259 (+) False XLOC_000423
TCONS_00000723 mRNA downstream 2216 35956529 ~ 35963260 (+) True XLOC_000423
TCONS_00000724 mRNA downstream 31500 35985813 ~ 36002774 (+) False XLOC_000424
TCONS_00000725 mRNA downstream 31580 35985893 ~ 35998397 (+) False XLOC_000424
TCONS_00000726 mRNA downstream 31606 35985919 ~ 35990380 (+) False XLOC_000424
TCONS_00000717 other upstream 146185 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000714 other upstream 433996 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000704 other upstream 1242799 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 1260627 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 1548915 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000728 other downstream 199948 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 711230 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 773984 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000744 other downstream 1169329 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000769 other downstream 2042146 37996459 ~ 37996577 (+) True XLOC_000440

Expression Profile

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