RNA id: TCONS_00000714


Basic Information

Item Value
RNA id TCONS_00000714
length 1209
RNA type processed_transcript
GC content 0.42
exon number 3
gene id XLOC_000418
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35494837 ~ 35609659 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTGTGCTAATGCGACCATAATGTTTTGGAAAAACAAGGAAAAACTGTACATATTTTCAAGGaaactgttttgttttactttgaaaTAAGGTAATCAAGCAGAGCTTTCACTACGCCGAACTTGGCGAGTATCAGTCGCTGCCTCGTTGCATATCAGCTCGGAAAAAACGAAAACAGCGTTTTATTTACACGGACAAAGTGTGTCAACTAAAAGGGGACTCAACTACAGACGGATACATGTGTGTTTAAATAAACTGTGCTTAATATATTCCCTTCGGCAGAGGAGAGGACTTCATCCAGAAGAGTTTGCGAGAGCCGCGTCGCTGTCGGGAAGCTCTTCCCGTGTGAACGTGCTGGAAACCAGGAGTGACGGCTGAAACACGAAACTTAAAACCCGTGTTTTCCTCAAAGCCTTTAAGAAAATGAGCGGAGGAGATGTGGTTTACTCGGGGTGGCTCCGAAAGTCTCCACCTGAAAAAAAGTTACGGCGTTATCTGCTCTTCTGACGTGTCGTTCTCATGAGGTGCCTGACAGCAGCATGGCGACCATTTCCTGCGCTGCTGCTGTTCTACCCCAGCTGATGCTTCCCAGATGGCTATAGAGAGCtctttctcgctctctctttctctattctTTATTTGGAACAAAGCCCAGTTATTGGTCTGAGTGCATTAAGAGGAGGTgttggagagagagagtgaaatgaGTAGGCTGGAAGACCTGCGCTGGAAAACAGTCGCGTGGGATTGAAGAATCAGTTTTGGCTGTTGTAGTGACACTCCAGAATGACTGACATAATAATCCAAATTTACTCTAATAGAAAACACGTGTGTCCTGTAAGTGAGCATTACATCATAGTTTTTAGGGGCTTTTAGATATGCAACTTGGAAGTGACCAAACACAAATTCTTGGTCACAACCAAGAAACCCGCCCCCAAAAAATGTTGCCTTTCTGACTTTTTGACATGAAAACCTCTTCTAGTTTACTGCAGTAGATTTGAGCTGAGGAATGTTTTCATAAGTAAAGGACTACAATCTTGGTTACTACATCAGCACCATCTGGACCTATGGACTTTAAATGCACAAATAGCAATTTGAGTTTGTGCTCCATtctaatttatttcttttattaatatatcatttgttttgtcatgtttcgcTGGTGATTCTGAGTTctgcaatatttatattttaatcaatttgCTGCT

Function

GO:

id name namespace
GO:0090504 epiboly biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04012 ErbB signaling pathway
ko04014 Ras signaling pathway
ko04072 Phospholipase D signaling pathway
ko04722 Neurotrophin signaling pathway
ko05205 Proteoglycans in cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05211 Renal cell carcinoma
ko05100 Bacterial invasion of epithelial cells
ko01521 EGFR tyrosine kinase inhibitor resistance
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-2674 Acts upstream of or within epiboly. Is expressed in brain and inner ear. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 26. Orthologous to human GAB1 (GRB2 associated binding protein 1).

Ensembl:

ensembl_id ENSDART00000149806

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003086 lncRNA upstream 401392 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA upstream 401392 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00002853 lncRNA upstream 633847 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002852 lncRNA upstream 635581 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002854 lncRNA upstream 635581 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003088 lncRNA downstream 381119 35896392 ~ 35898437 (+) True XLOC_000421
TCONS_00003089 lncRNA downstream 441188 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000721 lncRNA downstream 441188 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000722 lncRNA downstream 441220 35956493 ~ 35960055 (+) False XLOC_000423
TCONS_00000727 lncRNA downstream 478024 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00000711 mRNA upstream 3899 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000710 mRNA upstream 3899 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000712 mRNA upstream 6200 35473397 ~ 35488704 (+) True XLOC_000417
TCONS_00000709 mRNA upstream 260204 35194454 ~ 35234700 (+) True XLOC_000416
TCONS_00000708 mRNA upstream 687845 34763543 ~ 34807059 (+) True XLOC_000413
TCONS_00000716 mRNA downstream 274809 35790082 ~ 35835863 (+) False XLOC_000419
TCONS_00000718 mRNA downstream 347277 35862550 ~ 35867943 (+) True XLOC_000420
TCONS_00000719 mRNA downstream 433996 35949269 ~ 35954313 (+) True XLOC_000422
TCONS_00000720 mRNA downstream 441162 35956435 ~ 35970259 (+) False XLOC_000423
TCONS_00000723 mRNA downstream 441256 35956529 ~ 35963260 (+) True XLOC_000423
TCONS_00000704 other upstream 788434 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 806262 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 1094550 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 1371932 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 1527631 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000717 other downstream 275619 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 638988 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1150270 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 1213024 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000744 other downstream 1608369 37123642 ~ 37123772 (+) True XLOC_000432

Expression Profile

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