RNA id: TCONS_00000699


Basic Information

Item Value
RNA id TCONS_00000699
length 514
RNA type nonsense_mediated_decay
GC content 0.43
exon number 4
gene id XLOC_000410
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34685405 ~ 34694365 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACCGGAAATAACAAAAGTGTTCATTGTAGCCTAGCATGTTTCTGggtttgtaaataaatgtatgttttattattattttctcataCGATAACTCCACGATGTCTGACGAGAACGTAATTGGACCAGCTCTGCCACCgacattaaaaaaagatgagAATTCAGATGATGATGGAGCAAATTCTGCCTCCAGTCATAGGTCCAGCTCTGCCTCCTCTGTATAAAGCTTCGGAGTCCTCCAGTTCATGTGAAGACAGTGATGAAGAGGAGGTTGTCTTTAAGAGGGCCAAATATTCGTCATCTAGGAACCGGTCTTCTTCAAACAGAAGCACCACAAAAGATGAGATGGATATAAAGCAAACATATAAACATGAGGATGAGGAGGATTTCTTTGGTCCAGCACTTCCCCCAGGATTTCAGAAGCGAGACAAGTCACCTGACGGGCAATCATTACAAGGACCAGCACTCCCTCCTGGATTCAAAAACCAAGATGAAGATGAAGCTGGTGCAAAAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-212 Orthologous to human GPALPP1 (GPALPP motifs containing 1).

Ensembl:

ensembl_id ENSDART00000149891

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003085 lncRNA upstream 230998 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00003084 lncRNA upstream 451389 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA upstream 453318 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00000683 lncRNA upstream 983529 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 1166622 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00002852 lncRNA downstream 168726 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 168726 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002854 lncRNA downstream 170164 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003086 lncRNA downstream 345652 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA downstream 387825 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00000697 mRNA upstream 126641 34527213 ~ 34558804 (+) True XLOC_000409
TCONS_00000696 mRNA upstream 128722 34496855 ~ 34556723 (+) False XLOC_000409
TCONS_00000694 mRNA upstream 388042 34295925 ~ 34297403 (+) True XLOC_000406
TCONS_00000693 mRNA upstream 423452 34243650 ~ 34261993 (+) True XLOC_000405
TCONS_00000691 mRNA upstream 451507 34203858 ~ 34233938 (+) False XLOC_000404
TCONS_00000701 mRNA downstream 6731 34695373 ~ 34706763 (+) False XLOC_000411
TCONS_00000702 mRNA downstream 6736 34695378 ~ 34706903 (+) False XLOC_000411
TCONS_00000703 mRNA downstream 6747 34695389 ~ 34706679 (+) False XLOC_000411
TCONS_00000705 mRNA downstream 7861 34696503 ~ 34727517 (+) True XLOC_000412
TCONS_00000706 mRNA downstream 12502 34701144 ~ 34706821 (+) True XLOC_000411
TCONS_00000695 other upstream 285091 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 562473 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 718172 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000684 other upstream 950311 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000681 other upstream 991541 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000704 other downstream 6872 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000714 other downstream 806262 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 1102250 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 1465619 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1976901 36665543 ~ 36690899 (+) False XLOC_000428

Expression Profile

//