RNA id: TCONS_00000693


Basic Information

Item Value
RNA id TCONS_00000693
length 5150
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_000405
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34243650 ~ 34261993 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTCAATTTCTTTAGGTCTCGATGAATTTCGGTTCTTTAGAAATACAACGTCTTTAGCAGAGAGAGAAGATGAACATCCATGTGGAGGGGCTGGTGGCGATTGTCATCTTCTACCTGCTGATTTTGTTAGTGGGAATCTGGGCTGCATGGAAGAACAAGAACTCCGGCGTGATGGAGGGAACGGATCGCAGCGAGACTATTATGGTCGGCGGAAGAGATATTGGATTATTTGTCGGCGCATTTACCATGACTGCAACGTGGGTTGGTGGAGGTTACATCAATGGTACAGCAGAATATGTATATCTGCCCGGGTTCGGCTTGGCGTGGGCACAGGCTCCCTTCGGATATGCGCTTAGCCTTGTTTTGGGTGGCCTTTTCTTTGCTAAGCCCATGCGCTCTCGGGGTTACGTCACCATGCTTGACCCCTTCCAGCAACTGTATGGAAAGCGGATGGGTGGTCTGCTGTTCATCCCTGCACTAATGGGGGAAATGTTCTGGTCAGCCGCAATCTTATCTGCCCTcgGTGCCACACTGAGTGTGATCATTGACATTGACATCAACATGTCTGTGGTGATTTCGGCTCTTATTGCCATCTTCTACACGTTGGTGGGTGGCCTGTATTCAGTGGCTTACACTGATGTCGTCCAGCTCTTCTGCATTTTTTTAGGACTGTGGGTGAGTGTTCCTTTTGCGCTCTCGAACCCGGCTGTATCTGACATCGGAGTGACAGCAGTGAAGCAGCTCCATGCTAATCAGACCGCATGGCTTGGGAAGATAGAAAGCTCTGACAAATGGATGTGGGCTGACAACTTCTGCCTTCTGATGTTGGGGGGGATTCCCTGGCAGGTGTATTTTCAAAGGGTTCTTTCTGCCTCTTCAGCTACCTATGCTCAAGTCCTTTCCTTCCTGGCTGCCTTTGGCTGCATCATCATGGCTATTCCCTCTGTCCTGATTGGAGCCATAGGGGCTTCCACAGATTGGAACCAGACCTCGTACGGGCCGATTCCTCCCATGCAAAAGGACCAGTCGGACATGATCTTGCCGATTGTGCTCCAGCACCTTTGTCCAGCCTACATCTCCTTTTTTGGTCTGGGGGCCGTTTCTGCTGCAGTGATGTCATCTGCTGACTCATCCATCCTATCAGCCAGCTCCATGTTCGCAAGAAACATCTACCAGCTCGCTTTCCGCCAATCGGCCTCTGACCGTGAGATAGTGTGGGTCATGCGGATCACCATCTTTGTATTTGGGGCTCTCGCGACAGCCATGGCTCTCCTGACCGGGACGGTGTATGGTTTATGGTACCTGAGCTCTGACCTGGTCTACGTCATCATCTTTCCCCAACTCCTTAGTGTGCTTTTCATCCGGGGCACCAACACTTACGGCTCTGTAGCTGGATACTTCTTCGGCTTGATTCTGCGCATTGGCGGAGGAGAACCTTACCTCAAACTACCTCCATTCATCTACTACCCCGGATGGACCATTGAGGAGAAGGTCCATCATTTGACCCATGAGGTGGAATACCTGGTTATGCAGAGGTTTCCTTTTAAGACTGCTTCAATGCTGGCGTCATTCCTCAGCAATGTAGCATTCTCGTATCTGTTTAAATACCTGTTTGAGAGCGGAACTTTGTCAGCTAAATATGATTTCTTGGATGCCGTGGTGGCCCAGCACAGTGCTGAGATCATGGACAAGACCACTCTGGTCAATAAGAACATCATTGGGCTAAATGAAATGGCCCCTGTCAAACCGAGACTCAGTGTTACTTTAGCTGCTACCTTTACTAGGAAAGAAACCCTGACAGAAGAGGAGGACTCCAGCCCGGAGTCACCCATTCACGAAAATGAGTAGATGTTTATGGTCAATCCTGAGAAGAAGACTCCATAATGTGAACAACAGAGCTTcatctgaaaagaaaataattatctGATTTGAATTATGTAATCCATTGACGCCACATCCTTTTCTGGAATTTTCATTACTACCTTTTTGAAGGGAAAATGGGACAGTGTTTGAAACTCTGTTGAGAACGGAAAATAGAAGAACTGGTTTGAGTGATATTCGGAAAAACTGACTTGATGGTGTTTCTTATTCTGAGAAGCTGGTGGACTCCTGATGGTATGTACGAACCCTGAGTGACTTTCCTTTCCCTTCTAAAGAAAATGATGAGACACTGTGATAATCCTGAATATTTGATTgcattaatgggatagttcacacaaaaatgtgatggtatgtttgttttatttttgtccacCGATACAATCAAATATATTTGGCTTTTATTGTTTAAGTGTGGAAAAAACTGGATAAATCTGCCACAGGATAAAAAAGGGAATTTTTATCTCACAAGGGACATAATTGTAAGATATACTGTAATATAAGAACTGTTAGATACAAACAGAAGCAgtaaattatgataaaaatatCAGAATTCTGCATTTCTTTTAAGGATTGCcactttatttgttatttaaatgcaAGTTTAGTAGTGTTTCTGACCTAATTtctcaaaatattaatattacatataaCAATTCAAAGTGTCTTATTAAAAGCTGAATTTGTGAAGGTTAAGttttatataaactaatatataaaCGTATGTTTTAGGAAAAAGTCTAAACTATGTTAACTGGCATATAAGCttactagggctgtgcgattaattggATTTGACATGTTTCGATTAGCTAAATCACAAGAGGCagtgatatgaaatatatatgatttaatttCCCCTGCCCAGGACAAATGCGTGACTCCCGTCTGTGTGTGACaatcttactagccaattgagtgcgAATACctttgttctgcccaatcagaattgcgcaaccgaaCTATGCAGAACACCCACATTTAAACAAGCAAACAGTAAAGCtgtcaaaaacactgatttctttacaatttaaaatagcttCTTTGGATCTtatttctgctagagatactgttaaacaaatgtaaaaaatatataaaaaattgtacATATACCGTaagaacggtatagcagaaaatatttatggttttaaaactttgacttttccaaaccacggtatacattgaaaacggttattgtcctaTGCCTAGCTGTTacaccatatgaaaaaaaaaatatcacaaaggCACCAGGAGGTAACTAACATCATAACTCACTACTGTTTGCTTTAGAGAAAAATTAGGGTTTAATTTCTGagtattcataaacaaatttaaataaaagttggagtaattttatattttttcagttcctcactgcattttagcagtaagaatcTACTATACAGATTGTTGAGCTGAAGCTTTACTAccaaattaaatcacaaatcaaattgaaattgcaatatatgataaaaaaaaaatcactattagatattttccccaaatcgctcAGCCCTAAAACATACActtaaaaattatgtttgcagcttgtttaaactactcatTCAAAATCAGTTGAAACAACACGTTTCTTACgttatttttaagacatttttattttttatatatgttgaATACACTtcaattgtaaaaacaattaatttaacatagttgatttgtgttgggacagcttGAAATAATTGTGTGTAGCCAAGCATTTATTTTAagcatatatataaaaatagttttttggaaaaaatctgaattgtgagaTATGATCTAACAAGAAAAAtcttaaatgtgatttaaatttttAAGGGTCCTGTGTGTACTGTACTtttagtaatttcacttttatggggATAAATATGTTGATTTGATTGCTTTTAAtgtcaaataactaaaaataaacatacactgtaaaaaaaacagggttccttacaattcattcatgttgtgccaagacaaatcgattaagttaacttaacactttttatatatttgtggATTGAGAATTAAGTTAtcccaataaaatctcaagaattttgttgttttggctcaatttaaataagtagtttgaacaagtaaaagtttttttttttttttttttttttgagtataggAAAATGCTAATTTTGAAAGAACATTTCAGACAGCAAATACTATAACATGTAATATACAATATTAGGAACCATAGAATTGTGAGATAAAAAGTTGCAGTTACCTTTTTATTCTGTAATAGAGACAGGCTTCCTTTGAAATATTTGAaactgagtaaatgatggcaggattgtatttttttattctgtgaacTGTCCCTATAATGTTTCTGAATCTGGACTCAGGTCAgtccagaatttaaaaaaaaatgttacagtgATGATGATAATATATCCAATTATAGCTGTATATGAAAAAGAATAATAGGTGTAAGTTCATGTCATGCCATTACTTATGTCGAACTCCCATGGTAGATTTTAGTGCAGATTATCCTATCGTCCTCTCATAAAAATCAAATGTAGCTAAACAGTAATAAGCtgcttaataaatgtataattgtatAACAAGTGACGTGCTTCCCATCTACGAAATACCTTTAAAAACTGTGACATAAGAGTGCACATGTGGCAAATACATTTTTCATGTTCGTAGTGCAATATTAAGATGAACGGGAAGACTTAGAACATGgggaagtgaaaaaaaaaaaaaaaacatacttaatCTTATAATCGCCTTAACTAGCTACATTGATTAGATGGGAGTGATTGGACATTATGCAAACCTGGTTTGTCACTTTGTTGTACTTGAAAATGAATGTAGCAACTGATTTACCAGATGTAATAATAACCTCCAGGGTCTGTGCTGTGTTGacttttatttttgtgatttgcAAAGTCATACGTATGTCTAAAGAAGTCATTGTACCTGGTTTCAGGACGATCTAGCTGCTGTGTTGTTTTGTTGGCTTTAGCGATACAAGaatttgtgtgttgtgtgtgtgtatttatattccAATGAATATATCTATCCAGTATTTCACTAAAATGTAAAGTGTCACTTTACCATTCaacaagcatatatatatataacaatatatttatttgagtTGGTTGGAGCCAGCTacacaaatctatatttatttattatttgtggcCTACATAGAAGAGATAAtaaattttattgttaagacttTCATAGTTGTGTATGATTCATTGTTATATCGTCATGCTCAACAAAGTGTTTAAATCATTTGTTCAAACTCGCTTTCTAA

Function

GO:

id name namespace
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007274 neuromuscular synaptic transmission biological_process
GO:0015871 choline transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0008292 acetylcholine biosynthetic process biological_process
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043204 perikaryon cellular_component
GO:0016020 membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005307 choline molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-273 Predicted to enable choline:sodium symporter activity. Predicted to be involved in acetylcholine biosynthetic process; chemical synaptic transmission; and choline transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; dendrite; and perikaryon. Is expressed in dorsal habenular nucleus. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 20 and distal hereditary motor neuronopathy type 7A. Orthologous to human SLC5A7 (solute carrier family 5 member 7).

Ensembl:

ensembl_id ENSDART00000147201

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003084 lncRNA upstream 9594 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA upstream 11523 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00000683 lncRNA upstream 541734 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 724827 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000651 lncRNA upstream 2225535 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00003085 lncRNA downstream 188666 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00002852 lncRNA downstream 595375 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 595375 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002854 lncRNA downstream 596813 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003086 lncRNA downstream 772301 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00000691 mRNA upstream 9712 34203858 ~ 34233938 (+) False XLOC_000404
TCONS_00000690 mRNA upstream 11401 34203817 ~ 34232249 (+) False XLOC_000404
TCONS_00000692 mRNA upstream 11412 34224360 ~ 34232238 (+) False XLOC_000404
TCONS_00000687 mRNA upstream 42455 33969037 ~ 34201195 (+) False XLOC_000402
TCONS_00000686 mRNA upstream 42696 33969015 ~ 34200954 (+) False XLOC_000402
TCONS_00000694 mRNA downstream 33932 34295925 ~ 34297403 (+) True XLOC_000406
TCONS_00000696 mRNA downstream 234862 34496855 ~ 34556723 (+) False XLOC_000409
TCONS_00000697 mRNA downstream 265220 34527213 ~ 34558804 (+) True XLOC_000409
TCONS_00000698 mRNA downstream 423412 34685405 ~ 34694365 (+) False XLOC_000410
TCONS_00000700 mRNA downstream 423477 34685470 ~ 34694359 (+) True XLOC_000410
TCONS_00000688 other upstream 120678 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 276377 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000684 other upstream 508516 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000681 other upstream 549746 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000675 other upstream 788418 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000695 other downstream 138247 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000699 other downstream 423452 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000704 other downstream 433521 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000714 other downstream 1232911 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 1528899 35790892 ~ 35803084 (+) True XLOC_000419

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_03593799_03605097.mRNA True 3464 mRNA 0.43 10 CI01000049 3593727 ~ 3606491 (+)