Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000690 |
| length | 737 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 9 |
| gene id | XLOC_000404 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 34203817 ~ 34234056 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0050896 | response to stimulus | biological_process |
| GO:0032402 | melanosome transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0061512 | protein localization to cilium | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0008593 | regulation of Notch signaling pathway | biological_process |
| GO:0030030 | cell projection organization | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0060170 | ciliary membrane | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0005930 | axoneme | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| ko04147 | Exosome |
| ko04031 | GTP-binding proteins |
| id | description |
|---|---|
| ZDB-GENE-041219-2 | Predicted to enable GTP binding activity. Involved in cilium assembly. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pectoral fin development. Predicted to be located in ciliary membrane and cytoskeleton. Predicted to be active in axoneme. Is expressed in adipose tissue; brain; eye; heart; and retina. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 1; Bardet-Biedl syndrome 3; and retinitis pigmentosa 55. Orthologous to human ARL6 (ADP ribosylation factor like GTPase 6). |
| ensembl_id | ENSDART00000191432 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000683 | lncRNA | upstream | 501901 | 33697341 ~ 33701916 (+) | True | XLOC_000399 |
| TCONS_00002850 | lncRNA | upstream | 684994 | 33517802 ~ 33518823 (+) | True | XLOC_000394 |
| TCONS_00000651 | lncRNA | upstream | 2185702 | 32017437 ~ 32018115 (+) | True | XLOC_000383 |
| TCONS_00002849 | lncRNA | upstream | 2191439 | 32011880 ~ 32012378 (+) | True | XLOC_000381 |
| TCONS_00003083 | lncRNA | upstream | 2192023 | 32010262 ~ 32011794 (+) | True | XLOC_000380 |
| TCONS_00003085 | lncRNA | downstream | 218410 | 34450659 ~ 34454447 (+) | True | XLOC_000408 |
| TCONS_00002852 | lncRNA | downstream | 625119 | 34857368 ~ 34859323 (+) | False | XLOC_000414 |
| TCONS_00002853 | lncRNA | downstream | 625119 | 34857368 ~ 34861057 (+) | False | XLOC_000414 |
| TCONS_00002854 | lncRNA | downstream | 626557 | 34858806 ~ 34859323 (+) | True | XLOC_000414 |
| TCONS_00003086 | lncRNA | downstream | 802045 | 35034294 ~ 35093512 (+) | False | XLOC_000415 |
| TCONS_00000687 | mRNA | upstream | 2622 | 33969037 ~ 34201195 (+) | False | XLOC_000402 |
| TCONS_00000686 | mRNA | upstream | 2863 | 33969015 ~ 34200954 (+) | False | XLOC_000402 |
| TCONS_00000689 | mRNA | upstream | 8128 | 34181581 ~ 34195689 (+) | True | XLOC_000402 |
| TCONS_00000682 | mRNA | upstream | 481037 | 33697170 ~ 33722780 (+) | False | XLOC_000399 |
| TCONS_00000680 | mRNA | upstream | 509022 | 33668244 ~ 33694795 (+) | False | XLOC_000398 |
| TCONS_00000693 | mRNA | downstream | 11401 | 34243650 ~ 34261993 (+) | True | XLOC_000405 |
| TCONS_00000694 | mRNA | downstream | 63676 | 34295925 ~ 34297403 (+) | True | XLOC_000406 |
| TCONS_00000696 | mRNA | downstream | 264606 | 34496855 ~ 34556723 (+) | False | XLOC_000409 |
| TCONS_00000697 | mRNA | downstream | 294964 | 34527213 ~ 34558804 (+) | True | XLOC_000409 |
| TCONS_00000698 | mRNA | downstream | 453156 | 34685405 ~ 34694365 (+) | False | XLOC_000410 |
| TCONS_00000688 | other | upstream | 80845 | 34122880 ~ 34122972 (+) | True | XLOC_000403 |
| TCONS_00000685 | other | upstream | 236544 | 33967157 ~ 33967273 (+) | True | XLOC_000401 |
| TCONS_00000684 | other | upstream | 468683 | 33735018 ~ 33735134 (+) | True | XLOC_000400 |
| TCONS_00000681 | other | upstream | 509913 | 33683231 ~ 33693904 (+) | True | XLOC_000398 |
| TCONS_00000675 | other | upstream | 748585 | 33401858 ~ 33455232 (+) | True | XLOC_000393 |
| TCONS_00000695 | other | downstream | 167991 | 34400240 ~ 34400354 (+) | True | XLOC_000407 |
| TCONS_00000699 | other | downstream | 453196 | 34685445 ~ 34688642 (+) | False | XLOC_000410 |
| TCONS_00000704 | other | downstream | 463265 | 34695514 ~ 34706470 (+) | False | XLOC_000411 |
| TCONS_00000714 | other | downstream | 1262655 | 35494904 ~ 35515273 (+) | False | XLOC_000418 |
| TCONS_00000717 | other | downstream | 1558643 | 35790892 ~ 35803084 (+) | True | XLOC_000419 |
