RNA id: TCONS_00003086


Basic Information

Item Value
RNA id TCONS_00003086
length 589
lncRNA type intronic
GC content 0.40
exon number 2
gene id XLOC_000415
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35034294 ~ 35093512 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccccaagatttggtgcggtctcttctggccacccctaagaaaattttctgggggcgccactgcgtGGGACAGCGGTAAATCGCAGCTTTGTGCAGGAGGGATTTCATTATATGTTTGGCTTTCATCGGATGGACGGATGCTGTCTGGCGCACCACCAAAGAAGCAGACTTGAGAACAATCGCCTGAAGATCTCCGAGGACTTCTGCGGACAGAGAACAAAGACTGAAATTATGGCCCGCTGTCGAAGAAGCTCGTAAGGAAAacaagaaggctttctttgtcGGTGACCATGCCTTTGTAGATGGCATTGAGATTTCGCCTCCATCCTAAATTACAAAGGGAAAAGTATACTTGAGGCAATTGTAACTGAAAAAAATGCATGCTAATGCCCCCTTTCAGTACAAAATTACTCTCCTTTTAATATCTGTAAAAAAAGGAACGAAAGacgtatttaaatatttttgatttatgcAAGAAACAATAAAACCTTTTTCTCTGGAttaaaatttaagatatttttcttCCATATTTTTGGTTTATATAGACTGGGAAGAAACAGGCATTCAAATTCAGTTTTGTTAATTTGAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002853 lncRNA upstream 173237 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002852 lncRNA upstream 174971 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002854 lncRNA upstream 174971 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003085 lncRNA upstream 579847 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00003084 lncRNA upstream 800238 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00003088 lncRNA downstream 802880 35896392 ~ 35898437 (+) True XLOC_000421
TCONS_00003089 lncRNA downstream 862949 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000721 lncRNA downstream 862949 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000722 lncRNA downstream 862981 35956493 ~ 35960055 (+) False XLOC_000423
TCONS_00000727 lncRNA downstream 899785 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00000708 mRNA upstream 227235 34763543 ~ 34807059 (+) True XLOC_000413
TCONS_00000707 mRNA upstream 247335 34763539 ~ 34786959 (+) False XLOC_000413
TCONS_00000705 mRNA upstream 306777 34696503 ~ 34727517 (+) True XLOC_000412
TCONS_00000706 mRNA upstream 327473 34701144 ~ 34706821 (+) True XLOC_000411
TCONS_00000703 mRNA upstream 327615 34695389 ~ 34706679 (+) False XLOC_000411
TCONS_00000709 mRNA downstream 100942 35194454 ~ 35234700 (+) True XLOC_000416
TCONS_00000711 mRNA downstream 379707 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000710 mRNA downstream 379707 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000712 mRNA downstream 379885 35473397 ~ 35488704 (+) True XLOC_000417
TCONS_00000713 mRNA downstream 401325 35494837 ~ 35609659 (+) False XLOC_000418
TCONS_00000704 other upstream 327824 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 345652 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 633940 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 911322 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 1067021 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000714 other downstream 401392 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 697380 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 1060749 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1572031 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 1634785 36728297 ~ 36746569 (+) True XLOC_000429

Expression Profile

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