RNA id: TCONS_00000712


Basic Information

Item Value
RNA id TCONS_00000712
length 3645
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_000417
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35473219 ~ 35491005 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGATTGAAAGAGGTCGCAGTTTAACAAACAGATcacaacaaaatatacatttcgaCGTCTTtgtggtttttaattttttaatttttaccgTTGAAAACCAAGACGTTTTCGGAATGACATAATCGGTTTCAGGTTGTTCCGCTTACTTTGCCTTTCCTGTGGTGCAATACAGTCCAACCATGGATAAGATTTTGGAGGCGCTGGTCAGTTCCTCCCATCCTCAGAATGTCAAGCGGGCTATCGTGAAAAAAGTGATGGAGGCTGCAGAAAAGGAGGTGACGGAGGAGCAGTGCCAGGCCTTGTACCATCTCACCACCCGCCTTATTCTCCAGggtgaagatgtttttcagcGTCAGATTGGTTTCCAAGTGCAAGAAGCATACGCACGCTACCATCGTGATGAGTTTGCCCGCTTCTTCAGCAAGGAATTTGTGCTTGGCCTTCTTCAACAGGGCTATGGCTCTTTGGACCATAGAGACCCTGCAATCTTGGACTTCATTCACAGTTCTCTCAGACTGCTCATCAGCTGCCCGGCTGTGTTGGAACTGGCACCTCTGCTACAGACGGAGGTCCTACGCATCATCTGTGAACGGCCAGAACCAGCGACATGTGCCAAGTTGGCCACCATACTTACAGACTTCTCTCAGTGCATCCCACGAGACAAGGCAGGAGTTCTGTTCTGCCAACAGCTTGTGCGCACCTTTGCATATTTTCACTGTCCTGCCAGTGAAGAGCGGGAGCTGCGGGAATATGTGACCCAGGTGAGCAGGGTGAGCGCACTTCTGCAGGTCATCTGGAAGGCTGAGCCCACCACACTGCTGCCATCACTACAGGAGGTGTTTTCCATTATCTCATCCACAGATCCTTCGTTTGAACCATCTATTGCTCTAGCAAGCCTGGTCCAGCACATCCCTCTGCAAATGATCACAGTCCTCATCAAAAGCCTCACCACTGACCAGAATGTTAAAGATGCAAGTATGACACAAGCACTCTGCAggATGATTGACTGGTTGTCATGGCCTCTAGCTAATCATGTGGACACCTGGGTCATTGCTTTATTAAAAGGACTTGCTGCTGTTCAAAAGTTCACCATCCTCATAGATGTCACACTGCTCAAAATTGAACAGgTCTTTAATCGTCTCTGGTATCCCATTGTGAGGCAGGGAGCGCTGGTTGTTCTTTCACATATGCTGCTTAGTTTCCAGCACTCTCCTGAAGCCTTTCACTTATATCCATCTCTGCTTCTTTTACAGGAACTGCCTAAACCTAGTGAGGAGAAGATCAAATTTGTTCTGAACCAAAGTGCCTGGACATCTCAGTCAAATTCATTTGCTTCAGGCCTGCTCAAGATCACAGGCAAATCAGAAACAGGGAAGACAGGACTTGTGAATCTGGGCAACACATGCTACATGAACAGCATCCTCCAAATTTTATTTATGGCCACAGATTTCAGGCGACATGTTATGTCTCTGCAATTGAATGGCAGCAACACGCTCATGAAGAAGCTTCAGCTTCTTTTTGCTTTCTTGGCTCACACACAGAGAGCAGCATATTCACCAAGGAGTTTTTTGGATGTTTCTCGACCTACTTGGTTTTCAGCCGGATCCCAGCAAGACTGCTCAGAGTATTTGAGGTTTCTGTTGGACAGGTTGCATGAAGAAGAGAAGGCCCTTTCAGCCCTTCAGACGGCCAGCCCAAAACCAGAACCGGCAACCACTTCTCCAGAAACTCTCCACAATGCTGTAAGCCCACCGATCTCTGATGTGCCATCGCACCCAGATCCTGCAGCAGCTCAAGGAGAAACCGGCACTCTAGTGGAGCGCATGTTTGGTGGGAGACTCTCCACAGCAATCCGCTGCCTGCAGTGCCACAGCCTATCAGAGAAAGAGGAGCCATTCACAGACCTCTCTCTTGCCTTCTGCCCCTCCATGTCACAGCCACGGGGTCCCACTAATGAGCACAAAAGCTCCTCTACTCTGGGACCCTGCCAGGGGGCAGTGAATGGAGGCAGTGAAGCCTCCGAGGGCCCCGTCAAAGAAGGTGCAGCAAGCGGGATGGAGAGGCCCATGGTGGAACCAACAATATCTGTGCCAGATTTAGTGGACTATTTTTTGGCTCCAGAAATTTTAGAGAACGAGAACTGCTACTTTTGCGAACGCTGTGCCTCACTGCAGAGGGCTGAGAAGGCTATGCGAGTGGTGGCAGCCCCTGAATATCTCATTCTGACTCTGTTACGCTTCTCTTACGATGCCACCTGCCATGTGCGGCGCAAGATCCTGGACAATGTGGGCATTCCTCTGCACATGTCCCTTCCTTTACATCAACACAGTAGCTCTTCATCTTCAAATGTAGCTGCATCTTCCTCAACCGAGTCTCCAGACAGTTGCGAGAATCTGGCTAAAAAGCTGAAGCCTTCACAGAAAGAGGAAGGAATTGCAGAAAGCAGAATGAAGAGCAAGAAAAATAACAGTGATTTGCAGAAGCTCTCTGTGCCGTATGTGTTGAGTTCTGTTGTGATGCACTCTGGGATGTCTTCCGATAGCGGTCACTACTACTCGTATGGAAGGAACGTGAGTAGCGATGATGGTTGTGTGGCTCACACGAGTCCCAAGAGCCTGGATAATTCTAGCCAATCAGAGAGCTCGACAGCCCCACAGGAGGAAACGGGGCGTGCTGATCCAAAGTCGGCGGACTGGTTCTTGTTTAATGACAGCAGAGTGACTTTTACGAACTTTCAGTCATTGCAAAATGTCACAAGCCGCTTCCCCAAGGATACAGCCTATGTCCTGATCTACAGGAAACAAGAGGTCAGTGGAGAAGCAAGCAATTCAGGGCCGGTTGTAAATGGCGCAAGGCTGAGTGGAGAGCCACCTCTGCAGAAAGAGCTGATGGATGCCATTACCAAAGACAACAAACTCTTCCTACAGgagCAGGAGCTTAACGCCAGAACTCGGGCTCTTCAAGCAACCTCTGCATCCTGTTCATTCAGACCCAATGGTTCTGATGACAACGAGCCTCCTGGCAGCTGCGGGCCATCAGGTGGAGGTGGAGGAGGGGGATTTAACACCATCAGCAGACTAGTCTTTTAAAAAGAGTCACAGACGTACCCGCAGAGCACTGGACAGTCCCACTGACAACACCAGACTTAATTTATCCTCACAATCTGGATAAATGTGCCACCTCAGAACAGATATCTTCTTTTTTGGGGGGTTTGCATGCTTTTTCCCTTTACATCCACTTGTTTATCAGTGACGCAGTACTACAGGTCAGAAATGGGCATGCAATAAATTTGTAAAGAACACAATGTTTGGTCATATCCTGGAATCATAAATCATTTTCTAAGCAGATAATGAACTTAAAATTGAAACCAATATTTTTGGACCGTATTATACAGTGAACTAATTGCATGAATTTCTTTTAAATTGGAAGTTCTTCAGCTTCTGGTTTGGAGTATTAGAGATAAGACTGTTTCGTCAATTATTTAATTGCAGTcaagttttatttaattcattcagggAAAACTTTTTTggatttaactttttaaacattGAAGCTTTTTTGAGAGTTTTATGTGCCTTTCAATACTTCAGATTTTACAGAGATATTGGACTGGGTATACAAAACACTTTGCTCTTGCTGTAC

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101007-2 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Is expressed in female organism. Orthologous to human USP38 (ubiquitin specific peptidase 38).

Ensembl:

ensembl_id ENSDART00000158799

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003086 lncRNA upstream 379885 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA upstream 379885 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00002853 lncRNA upstream 612340 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002852 lncRNA upstream 614074 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00003088 lncRNA downstream 407688 35896392 ~ 35898437 (+) True XLOC_000421
TCONS_00003089 lncRNA downstream 467757 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000721 lncRNA downstream 467757 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000722 lncRNA downstream 467789 35956493 ~ 35960055 (+) False XLOC_000423
TCONS_00000727 lncRNA downstream 504593 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00000709 mRNA upstream 238697 35194454 ~ 35234700 (+) True XLOC_000416
TCONS_00000708 mRNA upstream 666338 34763543 ~ 34807059 (+) True XLOC_000413
TCONS_00000707 mRNA upstream 686438 34763539 ~ 34786959 (+) False XLOC_000413
TCONS_00000705 mRNA upstream 745880 34696503 ~ 34727517 (+) True XLOC_000412
TCONS_00000713 mRNA downstream 6133 35494837 ~ 35609659 (+) False XLOC_000418
TCONS_00000715 mRNA downstream 6664 35495368 ~ 35607935 (+) True XLOC_000418
TCONS_00000716 mRNA downstream 301378 35790082 ~ 35835863 (+) False XLOC_000419
TCONS_00000718 mRNA downstream 373846 35862550 ~ 35867943 (+) True XLOC_000420
TCONS_00000719 mRNA downstream 460565 35949269 ~ 35954313 (+) True XLOC_000422
TCONS_00000704 other upstream 766927 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 784755 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 1073043 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 1350425 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 1506124 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000714 other downstream 6200 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 302188 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 665557 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1176839 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 1239593 36728297 ~ 36746569 (+) True XLOC_000429

Expression Profile

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