RNA id: TCONS_00000727


Basic Information

Item Value
RNA id TCONS_00000727
length 530
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_000424
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35985813 ~ 36002774 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAGTGTAACTATCATTATGGAAAAGTCATAGAGAATAGAGTGCCAGGCGGTGTTGAGACGCGCTACAGTTGTTGTGAGAATGCAGTTGGGTCACCTGGATGTCAAGTCTTCAATCTTCACGTGCATGATGCAGTTAGCCTTCAGGGCTTTGTGAGCAGTCTTCATCAGTCTGCGGTGGGAAAAACATGTCCAGGAATCTATGCCATTGACACACAAACATGTTACACGACTCAAGGTCTGGAACTAGCAAGAGTGACTGTAGTGAGCAGCAGTTTGCAAGTTGTCTTTGACTCCTTTGTCAAGCCTGATAATGATGTCATTGACTATAATACCAGGTAGGGATTGCTTTCAAGGCATAACACTAAATTTGGCAACATTTGAATTGGATcatcacctttcatcaaagttttcCACTGTTTcctgttttaagacaattttgacaaacttttttgacatactttaaatgTTGATTGGTTTATTTTGCTTTTCACAATGTTGTTTTAGATGAGTGGGGGCATGGTGACATT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-448 Predicted to enable exonuclease activity. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000137071

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003089 lncRNA upstream 30235 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000721 lncRNA upstream 30235 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000722 lncRNA upstream 33242 35956493 ~ 35960055 (+) False XLOC_000423
TCONS_00003088 lncRNA upstream 94860 35896392 ~ 35898437 (+) True XLOC_000421
TCONS_00003086 lncRNA upstream 899785 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00002855 lncRNA downstream 656871 36651080 ~ 36657815 (+) False XLOC_000428
TCONS_00002856 lncRNA downstream 971791 36966000 ~ 36966282 (+) True XLOC_000431
TCONS_00000757 lncRNA downstream 1218027 37212236 ~ 37259712 (+) False XLOC_000433
TCONS_00000758 lncRNA downstream 1290366 37284575 ~ 37292181 (+) True XLOC_000433
TCONS_00000764 lncRNA downstream 1410781 37404990 ~ 37417631 (+) True XLOC_000435
TCONS_00000726 mRNA upstream 2917 35985919 ~ 35990380 (+) False XLOC_000424
TCONS_00000720 mRNA upstream 23038 35956435 ~ 35970259 (+) False XLOC_000423
TCONS_00000723 mRNA upstream 30037 35956529 ~ 35963260 (+) True XLOC_000423
TCONS_00000719 mRNA upstream 38984 35949269 ~ 35954313 (+) True XLOC_000422
TCONS_00000718 mRNA upstream 125354 35862550 ~ 35867943 (+) True XLOC_000420
TCONS_00000729 mRNA downstream 200552 36194761 ~ 36204000 (+) False XLOC_000426
TCONS_00000730 mRNA downstream 200572 36194781 ~ 36203999 (+) True XLOC_000426
TCONS_00000731 mRNA downstream 442727 36436936 ~ 36440301 (+) False XLOC_000427
TCONS_00000732 mRNA downstream 443376 36437585 ~ 36438731 (+) True XLOC_000427
TCONS_00000733 mRNA downstream 618451 36612660 ~ 36701206 (+) False XLOC_000428
TCONS_00000717 other upstream 190213 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000714 other upstream 478024 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000704 other upstream 1286827 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 1304655 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 1592943 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000728 other downstream 160052 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 671334 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 734088 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000744 other downstream 1129433 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000769 other downstream 2002250 37996459 ~ 37996577 (+) True XLOC_000440

Expression Profile

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