Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000757 |
| length | 635 |
| lncRNA type | retained_intron |
| GC content | 0.41 |
| exon number | 3 |
| gene id | XLOC_000433 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 37195465 ~ 37310490 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006972 | hyperosmotic response | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0046777 | protein autophosphorylation | biological_process |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050420-170 | Enables protein serine/threonine kinase activity. Acts upstream of or within hyperosmotic response and protein autophosphorylation. Located in microtubule cytoskeleton; nucleus; and synaptic vesicle. Is expressed in several structures, including hindbrain neural plate; immature eye; nervous system; optic primordium; and trigeminal placode. Orthologous to human DCLK2 (doublecortin like kinase 2). |
| ensembl_id | ENSDART00000169906 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002856 | lncRNA | upstream | 245954 | 36966000 ~ 36966282 (+) | True | XLOC_000431 |
| TCONS_00002855 | lncRNA | upstream | 554421 | 36651080 ~ 36657815 (+) | False | XLOC_000428 |
| TCONS_00000727 | lncRNA | upstream | 1218027 | 35993297 ~ 35994209 (+) | True | XLOC_000424 |
| TCONS_00003089 | lncRNA | upstream | 1249174 | 35956461 ~ 35963062 (+) | False | XLOC_000423 |
| TCONS_00000758 | lncRNA | downstream | 24863 | 37284575 ~ 37292181 (+) | True | XLOC_000433 |
| TCONS_00000764 | lncRNA | downstream | 145278 | 37404990 ~ 37417631 (+) | True | XLOC_000435 |
| TCONS_00002857 | lncRNA | downstream | 331546 | 37591258 ~ 37638367 (+) | True | XLOC_000436 |
| TCONS_00003090 | lncRNA | downstream | 573635 | 37833347 ~ 37834392 (+) | True | XLOC_000439 |
| TCONS_00000772 | lncRNA | downstream | 886696 | 38146408 ~ 38154559 (+) | False | XLOC_000441 |
| TCONS_00000742 | mRNA | upstream | 299145 | 36772348 ~ 36913091 (+) | False | XLOC_000430 |
| TCONS_00000743 | mRNA | upstream | 299617 | 36911471 ~ 36912619 (+) | True | XLOC_000430 |
| TCONS_00000741 | mRNA | upstream | 382061 | 36771954 ~ 36830175 (+) | False | XLOC_000430 |
| TCONS_00000739 | mRNA | upstream | 469868 | 36722122 ~ 36742368 (+) | False | XLOC_000429 |
| TCONS_00000737 | mRNA | upstream | 509881 | 36665602 ~ 36702355 (+) | False | XLOC_000428 |
| TCONS_00000759 | mRNA | downstream | 52868 | 37312580 ~ 37362246 (+) | False | XLOC_000434 |
| TCONS_00000760 | mRNA | downstream | 95775 | 37355487 ~ 37362113 (+) | True | XLOC_000434 |
| TCONS_00000761 | mRNA | downstream | 131429 | 37391141 ~ 37418194 (+) | False | XLOC_000435 |
| TCONS_00000762 | mRNA | downstream | 131483 | 37391195 ~ 37400053 (+) | False | XLOC_000435 |
| TCONS_00000763 | mRNA | downstream | 132004 | 37391716 ~ 37419873 (+) | False | XLOC_000435 |
| TCONS_00000744 | other | upstream | 88464 | 37123642 ~ 37123772 (+) | True | XLOC_000432 |
| TCONS_00000740 | other | upstream | 465667 | 36728297 ~ 36746569 (+) | True | XLOC_000429 |
| TCONS_00000735 | other | upstream | 521337 | 36665543 ~ 36690899 (+) | False | XLOC_000428 |
| TCONS_00000728 | other | upstream | 1057859 | 36154261 ~ 36154377 (+) | True | XLOC_000425 |
| TCONS_00000717 | other | upstream | 1409152 | 35790892 ~ 35803084 (+) | True | XLOC_000419 |
| TCONS_00000769 | other | downstream | 736747 | 37996459 ~ 37996577 (+) | True | XLOC_000440 |
| TCONS_00000777 | other | downstream | 1102636 | 38362348 ~ 38374799 (+) | False | XLOC_000445 |
| TCONS_00000779 | other | downstream | 1406042 | 38665754 ~ 38753029 (+) | True | XLOC_000446 |
| TCONS_00000785 | other | downstream | 1558600 | 38818312 ~ 38822163 (+) | False | XLOC_000448 |
| TCONS_00000786 | other | downstream | 1559865 | 38819577 ~ 38822163 (+) | True | XLOC_000448 |
