RNA id: TCONS_00000737


Basic Information

Item Value
RNA id TCONS_00000737
length 2665
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_000428
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36612660 ~ 36702355 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGCTTTGGTGCGTCGTGGCGTCCAAATGGGATTCTGCTAGACTTTGATAGTTGGTTAATTACTCATATGATACCACACAGATGTCTGGGGGGCTCTAGCCGAATATTCGTCTCTCActaactcactgactgactgactgacgggaTCCTGGGGAAGGCAGACATTTAAGGAGCGCTGTGCTAAATAACCCTAATCAGGCTCTTATCACCTCATCTGGAAATCAAAGAGCGGCCAGTGTTCTGCAATGGCCATTACGACGCTACAATTGTTTCTGCTAATGGCCGTTCTGGCCACTGGTGGATTATGTCTGATAAATGGCACAGAGGAAGCCCAGGATGCTTTATATCCAAACTCTACTACCTCCAAAACCAACGTACACAAGGGTTTCCAGCCCCCCACAAAAAAAGACGCTTCGGTTTTCAATATGAAGCATCCACCCTGTAGGGATCCCACTTCCATCAAGCTTTATTTTAAGTATATCAACACAATCATTTCCTGCATCGTGTTTGTGGTGGGAATAGTGGGTAATGCCACTTTATTGAAGATTATTTACCAGAATAAGTGTATGAGGAACGGACCCAATGCCCTCATCGCCAGTCTGGCTCTTGGAGACCTCATTTACATCACTATAGACATCCCTATAAATGTCTACAAGCTGCTGGTCACAAAGTGGCCATTTGATGACAGCTCCTTTGGACTCTTCCTGTGCAAACTTGTGCCATTCCTCCAGAAAGCGTCTGTTGGGATTACAGTGCTCAAtctatgtgctttgagtgtggaCAGGTACAGGGCTGTAGCCTCCTGGAGCAGAGTGCAGGGGGTCGGCGTTCCTCTTCTTACTGCCATCGAGATCTTCTCCATCTGGGTGCTGTCCATTATTTTGGCAGTACCTGAGGCAATGGTCTTCAACATGATCACCTTCACCTACAATAATCAAACCATCCGCACATGCATGCTCAAGCCTGAAACTGACTTCATGAATTTCTATGTGTACTGGAAAGATTGGTGGTTATTTGGCTTCTACTTCTGTGTGCCCCTGGCCTGCACGGCTATTTTCTACACACTCATGACCTGTGAAATGCTGCATCACAGAGATGGAAGCCTTCGCATCGCCCTCAGTGAACACCTTAAGCAGCGGCGTGAAGTGGCTAAAGCCGTCTTCTGTTTAGTGCTGATCTTTGCTCTCTGCTGGTTCCCTCTGCATCTCAGCAGACTGCTTAAGAAAATGGTTTATGTTCCAAACGATGAAAGACGTTGTGACCTGCTCAACTTCCTGTTGATCATGGATTATTTTGGTATCAACTTGGCGACTGTGAACTCTTGCATCAACCCCATCATTCTCTACTTTGTCAGCAAGAAGTTCAAGAATTGCTTTAAGTCCTGCTTGTGCTGCTGGTGTTACTCTAACAACCAGGTGTCCAGTTCAGGTCCAGTGAACGGCACTAGCATTCAGTGCAAAAACCATGAGCCCGGCAACCTCTACACCGACAGAGTCCGGAAATACAGCGACTGAGAAGAACGTTCTAAAAAAATATGCCTTAcaaaacatttatacaaacatTTATATAAGACTAAAAGGCCTTGTGCTTGGCGCATCAagctgttttaatatatatatagcttcagACCAGACAATGGACCTGATATATTTAAAGTCTCCCACAACAGCTGTTTCTCAGACTTCGGGAGTGTTGTTTTGCTGTGTGAGAAGTGGTGGGAGTGAAGACCAACAGCAACAGGATGCAGCTGAACCTAACAGCTACAAATGAACCCTGATCAAGGGCTCCACATGCTTTCCTTGGGTAAATACTGCACGACCAACACGGTCAGGATCGTCACTGTCCGATGAGAAAGGAAGTCAAAAAAAGGAAGagtgaagtttttttttggtTCCCTCCTGTGAACTTTGCCAAAGAAACTCCCAGCGTTCTGCTGAGGAGGCAGCCAATCCTTCATATTCAGCATCCGGTTGTTATTGTTAGCATATtcaaaaatgcagttttttttttttttgtttttttttttaaacaggaaccTTTAGGTCACCTCCTGCCTATATCTTTGTTTAGTTCTTAAGTGAATTGTATTGTGCGCTGGACGTCACCTCTCTTTAGGAAGAAAATGAAGATTTGTGTTTGAGTGCTAAATGagtttttatgtgtgtgcgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtatgaatATGTACAAAATCAAGCATAAACACAAGACAGCAAATGTGAAGGGTAGCAGATGGATTCTGTTCCAGCATTAAGGATTCAAGTGAAACTTTGACCTTGGTGGGACTTAAGAGTAATTTCTAGGAATGCATCCAACTGCAACAAATGCTGGGTtatagtaaaagaaaagaaataaagaaaaaaaaagagagcataAGGGCACGGGAAAAGGCTTTCTGTAATCCAAAAAAGTGATTCaaacattgctttatttttaCACTGTGAATTTTCTGTGAACAGGACCCATACATGCTATTTACCTTATACActttaatattattgatatttaatgGCCTCAGTATTTGTATATCATCTGTATTTTaagttgatttatttttctgtatatTGTGGTAGAAAAAATGTATCTTCGTTCAAAAGCTCAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0010155 regulation of proton transport biological_process
GO:0051216 cartilage development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0048066 developmental pigmentation biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010906-2 Predicted to enable endothelin receptor activity. Acts upstream of or within several processes, including cartilage development; regulation of proton transport; and social behavior. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including epithelium; forebrain; neural crest; pharyngeal arch; and vasculature. Human ortholog(s) of this gene implicated in hypertension (multiple); lung disease; mandibulofacial dysostosis with alopecia; migraine; and obstructive sleep apnea. Orthologous to human EDNRA (endothelin receptor type A).

Ensembl:

ensembl_id ENSDART00000010632

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002855 lncRNA upstream 7787 36651080 ~ 36657815 (+) False XLOC_000428
TCONS_00000727 lncRNA upstream 671393 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00003089 lncRNA upstream 702540 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00002856 lncRNA downstream 263645 36966000 ~ 36966282 (+) True XLOC_000431
TCONS_00000757 lncRNA downstream 509881 37212236 ~ 37259712 (+) False XLOC_000433
TCONS_00000758 lncRNA downstream 582220 37284575 ~ 37292181 (+) True XLOC_000433
TCONS_00000764 lncRNA downstream 702635 37404990 ~ 37417631 (+) True XLOC_000435
TCONS_00002857 lncRNA downstream 888903 37591258 ~ 37638367 (+) True XLOC_000436
TCONS_00000731 mRNA upstream 225301 36436936 ~ 36440301 (+) False XLOC_000427
TCONS_00000732 mRNA upstream 226871 36437585 ~ 36438731 (+) True XLOC_000427
TCONS_00000729 mRNA upstream 461602 36194761 ~ 36204000 (+) False XLOC_000426
TCONS_00000730 mRNA upstream 461603 36194781 ~ 36203999 (+) True XLOC_000426
TCONS_00000725 mRNA upstream 667205 35985893 ~ 35998397 (+) False XLOC_000424
TCONS_00000739 mRNA downstream 19767 36722122 ~ 36742368 (+) False XLOC_000429
TCONS_00000741 mRNA downstream 69599 36771954 ~ 36830175 (+) False XLOC_000430
TCONS_00000742 mRNA downstream 69993 36772348 ~ 36913091 (+) False XLOC_000430
TCONS_00000743 mRNA downstream 209116 36911471 ~ 36912619 (+) True XLOC_000430
TCONS_00000745 mRNA downstream 493110 37195465 ~ 37305827 (+) False XLOC_000433
TCONS_00000728 other upstream 511225 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000717 other upstream 862518 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000714 other upstream 1150329 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000704 other upstream 1959132 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 1976960 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000740 other downstream 25942 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000744 other downstream 421287 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000769 other downstream 1294104 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000777 other downstream 1659993 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000779 other downstream 1963399 38665754 ~ 38753029 (+) True XLOC_000446

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_04704214_04715966.mRNA True 2922 mRNA 0.41 7 CI01000049 4703320 ~ 4716713 (+)