RNA id: TCONS_00000741


Basic Information

Item Value
RNA id TCONS_00000741
length 783
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_000430
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36771954 ~ 36913091 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCCGGAGTCCTGCACGCGGGAGGAGACTCGCGCTCGACTGTCATTCGCGGACCAAAAACCACACTGGATATTATTACCTCTATTTCAAGCGATATCGGTGTAGCCCAGAGCTGTTTTATCTTATCATACACGAGTTTAAACCCGGGATTTACTTAATCCAGCCAGGACTAAGTTTACTCGTGCGCCTTTGGAAAGAGTTCCATTCCCAAGAGGAGTCCCGACGCGTTTAGTCTTCCTAAAATACACGAGCACGCGTTAGAAACGACTTTTTAACAACAGCCTTTTTATTCAGCTTCTTGATTTGaccattttttgtatttattcattcgcTGGTCGCTTTGTAACGGGATTTAAACGCTAGCTAGTCTTTAAACTAGCTGAGTCCAGTAAAAATGGGTTTACACCCGTTGGAGTTCAGTGAATGTTACCTGGACAGTCCTGCTTTCAGGGACAAAATCAAAGCTCATGAAGCAGAGCTGGAAAAAACAGGCAGATTCATCAAAGAGTTGTACAAAGATGGAAAGAATCTCATCAATGCCACCAAACAACTTTCATTGGCCCAGAAGAAGTTTGCTCAGTGCCTGGGTGAGTTCAAATTCGAGTACATCGGCGATGCCAAAACTGACGACGAGAAGTGCATTGATGAATCCTTGCAAGAGTTCTCCCTCTTTCTCCGTAACTTGGAAGAACAAAGAGACCTGATGATGAGAAACATCACAGAGACACTGATGAAGCCCTTAGAAAACTTTCGAAAAGAGCATCTTGGCTCAGCAAAGGTAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko05100 Bacterial invasion of epithelial cells
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060512-221 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP10 (Rho GTPase activating protein 10).

Ensembl:

ensembl_id ENSDART00000149022

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002855 lncRNA upstream 114139 36651080 ~ 36657815 (+) False XLOC_000428
TCONS_00000727 lncRNA upstream 777745 35993297 ~ 35994209 (+) True XLOC_000424
TCONS_00003089 lncRNA upstream 808892 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00002856 lncRNA downstream 135825 36966000 ~ 36966282 (+) True XLOC_000431
TCONS_00000757 lncRNA downstream 382061 37212236 ~ 37259712 (+) False XLOC_000433
TCONS_00000758 lncRNA downstream 454400 37284575 ~ 37292181 (+) True XLOC_000433
TCONS_00000764 lncRNA downstream 574815 37404990 ~ 37417631 (+) True XLOC_000435
TCONS_00002857 lncRNA downstream 761083 37591258 ~ 37638367 (+) True XLOC_000436
TCONS_00000739 mRNA upstream 29586 36722122 ~ 36742368 (+) False XLOC_000429
TCONS_00000737 mRNA upstream 69599 36665602 ~ 36702355 (+) False XLOC_000428
TCONS_00000738 mRNA upstream 70400 36674584 ~ 36701554 (+) True XLOC_000428
TCONS_00000733 mRNA upstream 70748 36612660 ~ 36701206 (+) False XLOC_000428
TCONS_00000734 mRNA upstream 70748 36651059 ~ 36701206 (+) False XLOC_000428
TCONS_00000743 mRNA downstream 81296 36911471 ~ 36912619 (+) True XLOC_000430
TCONS_00000745 mRNA downstream 365290 37195465 ~ 37305827 (+) False XLOC_000433
TCONS_00000747 mRNA downstream 365290 37195465 ~ 37310490 (+) False XLOC_000433
TCONS_00000746 mRNA downstream 365290 37195465 ~ 37310490 (+) False XLOC_000433
TCONS_00000749 mRNA downstream 365744 37195919 ~ 37291989 (+) False XLOC_000433
TCONS_00000740 other upstream 25385 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000735 other upstream 81055 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000728 other upstream 617577 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000717 other upstream 968870 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000714 other upstream 1256681 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000744 other downstream 293467 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000769 other downstream 1166284 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000777 other downstream 1532173 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000779 other downstream 1835579 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000785 other downstream 1988137 38818312 ~ 38822163 (+) False XLOC_000448

Expression Profile

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