RNA id: TCONS_00000708


Basic Information

Item Value
RNA id TCONS_00000708
length 1606
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_000413
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34763539 ~ 34807059 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGATTTGCCAATCCTTCTGTTTTTAACTATACGAATGAACGCAGCCATGCACTGTAAGCAATGGCTGTTGAGGAGCTGAACTGAAGTTGTGTGAACTATCTTTTCTTTCTGATCCTGTGGCTAATAAAGACAATCTTCTAACAGGTCAAGATGTCTGGATATGTGTCAGCAATTGCCCTGAAAGCCTGGATGACACTGGTGTTGCTTTCCAGAATACAAGGTAAGGTACTTGCACCATCGCATCTGCAGGCAATGGCTGGGCTTCCCTTCGTGCTGGCCTGCAACATTACTATGGAGAAAGGGGAGGTTTTAAAACAGGTGCTGTGGTTGGACATGACAAATAAAACTATACTACACTATCAGCCAGATAAGTACGACCACGTCACCAGAGTAGATGGAGTTGAGCTTTCACAGCAAACCGCAGCTCCACAAGCTCACACCAGTGTTATCACCATCAGAAAAGCTGCACCAGCCAATGAGGGCTGCTACCACTGTCTATTTGATGTCTACCCTTCTGGGCAGCAGAGAGGAAGGACGTGTCTTTCACTCACGGCAATGGTGGAGCAAATGGACAATAAAACAGTTGTGAGTGGAAAGCCTGTTACCTTTTTGTGCAACTACATCCTCAGTATGCGGGTCCGGCAGGTTTTGTGGAAGAAAACAGCTGAGCAAGGGGACACTGCCATTGTTGCCTCTTATGTCAAGTATAGCAAACCTGTCGTTACCAGCCCTTTCAAGGGTCGGGTATCTCTAAATCCATCACTCGGCCAGACCAGGCTCTCCATACACCACGCTCAGACAGAGGATGAGGGCTGTTACACCTGCGAATATCACACATATCCAGATGGAATTAAGAGCACTACAGCTTGCCTTTCTGTTTATGTGCTCCCCAACCCGGAGGCCAGTTATGTGACTGTATCACAGGGCATCATTGAGGCAAACTGTTCAGCCATGTCCCGTCCTGCAGCCGAGATCTCTTGGAACGTGGAGGGTCATAATCAAACTTTGGGCCCTGCCGTAATATCATTTTACCAGCAAGGGGACGGCACCACAATGGTGGTCAGCTCTATTCAACTGCAGAGCGAACTACTGGATGATGAGCTTGTAAAATGTGAAGTTCATCATCAGGGTCTTGAGGCAGCCATATATGTGTCGCTCAATAAATCTAGGAATGGCCATGTCATTCTTATTTCAGCCAGCTGCGTGGCCCTTGTGCTGATCCTATGTCTGTGTGTCTGCCTAAAGAAGTGTTAAATTCACCTGCTGATTTGGTTGACTGAAAGGAGGGACATTGCTGCTACAGTATGACAGTATATGTTCACATGTTCACCCCGACCAAACAACAGTGTCTTCTGTCTGAATCACAGAGCAATACTTGTGTCTTCTAATATGACTGATATTCAGTGTAAAGAAATTTTTAATCCACTCTCTCAacactaaacactttatttattgTAGAGTGTATATTTTAGCAAAGGCTTTAGAAGCCCAACTGTACTAAATCATTCTCTTAAAACTTACTTTAATCTAAACACACTCATATTATCTCAAAGTTGACCTTCTGTAACAATAGAAAAGGACGTACAAAATATTATTGTAAGCTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080208-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD200 (CD200 molecule).

Ensembl:

ensembl_id ENSDART00000113808

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003085 lncRNA upstream 309096 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00003084 lncRNA upstream 529487 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA upstream 531416 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00000683 lncRNA upstream 1061627 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 1244720 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00002852 lncRNA downstream 50309 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 50309 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002854 lncRNA downstream 51747 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003086 lncRNA downstream 227235 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA downstream 269408 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00000705 mRNA upstream 36026 34696503 ~ 34727517 (+) True XLOC_000412
TCONS_00000702 mRNA upstream 56640 34695378 ~ 34706903 (+) False XLOC_000411
TCONS_00000706 mRNA upstream 56722 34701144 ~ 34706821 (+) True XLOC_000411
TCONS_00000701 mRNA upstream 56780 34695373 ~ 34706763 (+) False XLOC_000411
TCONS_00000703 mRNA upstream 56864 34695389 ~ 34706679 (+) False XLOC_000411
TCONS_00000709 mRNA downstream 387395 35194454 ~ 35234700 (+) True XLOC_000416
TCONS_00000711 mRNA downstream 666160 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000710 mRNA downstream 666160 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000712 mRNA downstream 666338 35473397 ~ 35488704 (+) True XLOC_000417
TCONS_00000713 mRNA downstream 687778 35494837 ~ 35609659 (+) False XLOC_000418
TCONS_00000704 other upstream 57073 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 74901 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 363189 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 640571 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 796270 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000714 other downstream 687845 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 983833 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 1347202 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1858484 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 1921238 36728297 ~ 36746569 (+) True XLOC_000429

Expression Profile

//