RNA id: TCONS_00000702


Basic Information

Item Value
RNA id TCONS_00000702
length 1255
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_000411
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34695373 ~ 34706903 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTTGATACTGCAGCGCTAGCTAACGTGTGTTGCGTGGAGGAGGTACATTAAATACACATGAAACAAGtctaataaaaacacattttaacgtTACAGTATTAACAGGCATGTCGGAGAAAGGAGAGGTAGATTTAACGGGGGCGAAACAGAACGCTGGTGTATGGCTGGTTAAAGTCCCAAAGTACTTGTCACAGCAATGGACCAAAGCAACAGGGAGAGGAGAAGTTGGAAAGCTCCGAATTAGCAAGAATCAAGGAAAGGCAGAGgtgtcaTTCACACTCAATGAGGAGCTGACCACAATAGAGACTATTGGAGAGAAGACCTCTATGGTACGAGCCCCTAGAGAGCATCCTTTCACTTTGCAGACAGTTGGTGGACAAACTCTGGCTGTTTTTACTGAAAACTCTTCAGGGCAGTCAGATGCTGAGGCCAGCGGCTCAGGTACTGGTTCAGGCCCAgATAAAATCGCACTGGAAGGAGTAGTGGTGCAGAGAGCGGAATGCAGACCGGCCGTCAGTGAAAGCTACATGAGGCTTAAGAAACTGCAGATTGAGGAATTATCGAAACCCCTCAGGTTTTCTCAGCAGCTGGACAAAGCAGTTACCACTAACTACAAACCAGTGGCTAATCATGCTTATAATCTCGACTATGAGAAGAGGAAGAAAGAAGAAGGGAAGAGGGCACGTGCAGATAAACAGCAGGTGCTGGACATGTTGTTCTCCGCTTTTGAGAAGCATCAGTTTTATAACATTAAGGATCTGGTGGACATCACAAAACAGCCTGTGATTTACTTGAAGGAGATTCTTCGGGACATTGGCATTTACAATGTCAAAGGCACCCACAAAAACACCTGGGAGCTCAAACCCGAGTACAGGCATTACCAGAGCGAAGAGAAGAGTGACTGATCCTCTTCAAGATCACCTGCTTACATGTGTTTGGACTCAGAATGACTGAAATGTTATTTCTGGATTATTTCAAGGATTCTTCTGTTGTTTTTAGAGCTGCATCTGAAACTCATGTTATGTTTTACAACGCTAAGATGTTTTATTGAGAAATGGAATTGTTCAATCAGAACTGAGGGAAAACACGCATTATATAGCAGCAATTGGTGTATAACGAGAAGGTGATGTCAGAATTTTAAGTAAAAGTTAAGTAAAATATTCTGATTTGGTTTTCTAATTGAAATGCAGTTATTTTGTATACTATTTAACTTCAGTAAATGTTCTTGAAATAAAGGTTTTGTACAAAATAA

Function

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005634 nucleus cellular_component
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-131 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F2 (general transcription factor IIF subunit 2).

Ensembl:

ensembl_id ENSDART00000102118

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003085 lncRNA upstream 240931 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00003084 lncRNA upstream 461322 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA upstream 463251 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00000683 lncRNA upstream 993462 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 1176555 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00002852 lncRNA downstream 150465 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 150465 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002854 lncRNA downstream 151903 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003086 lncRNA downstream 327391 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA downstream 369564 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00000698 mRNA upstream 1013 34685405 ~ 34694365 (+) False XLOC_000410
TCONS_00000700 mRNA upstream 1019 34685470 ~ 34694359 (+) True XLOC_000410
TCONS_00000697 mRNA upstream 136574 34527213 ~ 34558804 (+) True XLOC_000409
TCONS_00000696 mRNA upstream 138655 34496855 ~ 34556723 (+) False XLOC_000409
TCONS_00000694 mRNA upstream 397975 34295925 ~ 34297403 (+) True XLOC_000406
TCONS_00000707 mRNA downstream 56636 34763539 ~ 34786959 (+) False XLOC_000413
TCONS_00000708 mRNA downstream 56640 34763543 ~ 34807059 (+) True XLOC_000413
TCONS_00000709 mRNA downstream 487551 35194454 ~ 35234700 (+) True XLOC_000416
TCONS_00000711 mRNA downstream 766316 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000710 mRNA downstream 766316 35473219 ~ 35491005 (+) False XLOC_000417
TCONS_00000699 other upstream 6736 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 295024 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 572406 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 728105 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000684 other upstream 960244 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000714 other downstream 788001 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 1083989 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 1447358 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1958640 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 2021394 36728297 ~ 36746569 (+) True XLOC_000429

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_03852103_03860363.mRNA True 1116 mRNA 0.41 7 CI01000049 3852103 ~ 3860774 (+)