RNA id: TCONS_00000700


Basic Information

Item Value
RNA id TCONS_00000700
length 1627
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_000410
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34685405 ~ 34694365 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTAGCCTAGCATGTTTCTGggtttgtaaataaatgtatgttttattattattttctcataCGATAACTCCACGATGTCTGACGAGAACGTAATTGGACCAGCTCTGCCACCgacattaaaaaaagatgagAATTCAGATGATGATGGAGCAATCATAGGTCCAGCTCTGCCTCCTCTGTATAAAGCTTCGGAGTCCTCCAGTTCATGTGAAGACAGTGATGAAGAGGAGGTTGTCTTTAAGAGGGCCAAATATTCGTCATCTAGGAACCGGTCTTCTTCAAACAGAAGCACCACAAAAGATGAGATGGATATAAAGCAAACATATAAACATGAGGATGAGGAGGATTTCTTTGGTCCAGCACTTCCCCCAGGATTTCAGAAGCGAGACAAGTCACCTGACGGGCAATCATTACAAGGACCAGCACTCCCTCCTGGATTCAAAAACCAAGATGAAGATGAAGCTGGTGCAAAAGAGGATAAGGGAGGGTTTTCGGGACCAGCTCTTCCCCCGGGATATCGAAAGCGAGATAAATCTCCTGAACGGCCACCAGCAATAGGGCCTGCTCTACCTCCAGGGTTTAAAAGACTGGATGATAATGAAGAGGAAGAAAAAGATGAAGCTGAAGGATTTTCAGGACCAGCTCTACCACCAGGTTTTAAACCAGACTTGTCAAGcagtgaagaagaagaagatgattaTGTGATTGGGCCCATGCCATCAAAAGGACCGTTTCAGGACACGGTTGCACTGGACTTTGAAAGAAGGGCTCAACAAATGAAAGACAAACTTACAGGAGTGGATacTGGACCAACAGTCCTCTCCAGAGAGAGCTGGATGACAGAACTGCCTCCTGAGTTGCAGCATGTAGGCCTGGAAGCACGAACCTTCAAGAAAAGAACAGGCCCTGAAAACAAAGACCGCTCAATCTGGACTGACACTCCTGCAGACCGCGAGCGCAAAGCAAGAGAACGACAAGAAGCTAAGGAAAAAGGTGAATCAGCCAAGGATGATGTGCCTCGTCTGTCTCAGAAAGAGCTCGAGATGGCTGACAAAATTTCCAAATATAATGAGTCCAAGCGTGGTGAATCTCTCATCAGTTTGCACACTAAGAAAATGAAGAGAAAAGCTGAGGAGGATGCTAAAAAGCCTGTAGAGAGAAGACCCTTTGACAGAGATGCGGACCTCCAAGTCAATCGCTTTGATGAAGCTCAGAAAAAAGCTTTGCTAAAGAAGTCAGCTGAACTGAACACCCGCTTCTCACACAGCAAAGACCGCATGTTCCTGTGAGAGAAAGAGTCATCTGATTTTATAAAAAGATGTTGTAGTGTTTTGGCATCATTAAAACATGATCATAAAAATGCTTATATGtataataattgaaaataatgtTACTTCTAAATTTTCTTGGATTTTTTAAGGTTTAAAACGCTAAGTTTTAGTGTTACCTTTTTTCATAATATCATGAAAATTTCAGTCTTGTCTTTATCTAGTGATATGCTAACATTCCACTCATTTTTGTCAGTGTTAAAGGTGTTATAGGTAGTGCATTATTTTACAGTCTGTACTGTTTTCATAGAATATGTCACATTCAGGTCATATTTTgccctaaaataaaatacattt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-212 Orthologous to human GPALPP1 (GPALPP motifs containing 1).

Ensembl:

ensembl_id ENSDART00000166007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003085 lncRNA upstream 231023 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00003084 lncRNA upstream 451414 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA upstream 453343 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00000683 lncRNA upstream 983554 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 1166647 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00002852 lncRNA downstream 163009 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 163009 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00002854 lncRNA downstream 164447 34858806 ~ 34859323 (+) True XLOC_000414
TCONS_00003086 lncRNA downstream 339935 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00003087 lncRNA downstream 382108 35076467 ~ 35093512 (+) True XLOC_000415
TCONS_00000697 mRNA upstream 126666 34527213 ~ 34558804 (+) True XLOC_000409
TCONS_00000696 mRNA upstream 128747 34496855 ~ 34556723 (+) False XLOC_000409
TCONS_00000694 mRNA upstream 388067 34295925 ~ 34297403 (+) True XLOC_000406
TCONS_00000693 mRNA upstream 423477 34243650 ~ 34261993 (+) True XLOC_000405
TCONS_00000692 mRNA upstream 453232 34224360 ~ 34232238 (+) False XLOC_000404
TCONS_00000701 mRNA downstream 1014 34695373 ~ 34706763 (+) False XLOC_000411
TCONS_00000702 mRNA downstream 1019 34695378 ~ 34706903 (+) False XLOC_000411
TCONS_00000703 mRNA downstream 1030 34695389 ~ 34706679 (+) False XLOC_000411
TCONS_00000705 mRNA downstream 2144 34696503 ~ 34727517 (+) True XLOC_000412
TCONS_00000706 mRNA downstream 6785 34701144 ~ 34706821 (+) True XLOC_000411
TCONS_00000695 other upstream 285116 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000688 other upstream 562498 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000685 other upstream 718197 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000684 other upstream 950336 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000681 other upstream 991566 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000704 other downstream 1155 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000714 other downstream 800545 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 1096533 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000728 other downstream 1459902 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 1971184 36665543 ~ 36690899 (+) False XLOC_000428

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_03844455_03850424.mRNA True 1027 mRNA 0.47 6 CI01000049 3844455 ~ 3850430 (+)