RNA id: TCONS_00000681


Basic Information

Item Value
RNA id TCONS_00000681
length 520
RNA type processed_transcript
GC content 0.48
exon number 5
gene id XLOC_000398
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33668236 ~ 33694795 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGAACAGAAGGCTCAGGAAGAACAAGACAAGAAAGAAAGAGCAGAGAGAGTTCGGCGGATCAGAGAAGAGAGAGACCGACAGGAACGGGAGGAAGCAGAGCGAGAAGGAAGGACATTAAAAGAGGAAGAGCTAGATGATGTCAACATGTTCAACCCCTTTCAACCAATAAACAATGTTTTGACTGAGAACCAAGACAGACTAAACAGAGAAAAAGAGATGCAAAGACAGAGGGAAAATGGCCAGCAGGGCAGTGTGCAAGAACAGATAGCACTTCAagatgaggaggaagaagaggaagatGAAGAGAGTGAGAGACAGACTCCAGAAAGCACAGAATCAGGAGCAGTGGACCAGACCAAAAAGAAAACTAGGAAACTACGGTTGAAACGCAAACACAGAGTCGACCCTCTTAGGATGGAAGAAGCAGCACCCAAAAGCCCCACGCCTCCTCCTCTGCCAGCACGGGCAGTGTAGCAAGCTACGCAGATGTAATTGCCCATAAGAGAGGAACTGATAC

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:1905515 non-motile cilium assembly biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0021830 interneuron migration from the subpallium to the cortex biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007275 multicellular organism development biological_process
GO:0021943 formation of radial glial scaffolds biological_process
GO:0097500 receptor localization to non-motile cilium biological_process
GO:0060271 cilium assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-021217-3 Predicted to enable GTP binding activity. Acts upstream of or within cilium assembly and photoreceptor cell outer segment organization. Located in cilium. Is expressed in Kupffer's vesicle; nervous system; otic vesicle; and pronephros. Used to study Joubert syndrome 8. Human ortholog(s) of this gene implicated in Joubert syndrome 8. Orthologous to human ARL13B (ADP ribosylation factor like GTPase 13B).

Ensembl:

ensembl_id ENSDART00000149105

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002850 lncRNA upstream 164408 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000651 lncRNA upstream 1665116 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 1670853 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 1671437 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 2162259 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00000683 lncRNA downstream 3437 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 537699 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 537834 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 756755 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00002852 lncRNA downstream 1163464 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00000678 mRNA upstream 19526 33647682 ~ 33663705 (+) True XLOC_000397
TCONS_00000677 mRNA upstream 47927 33634186 ~ 33635304 (+) True XLOC_000396
TCONS_00000676 mRNA upstream 113986 33558555 ~ 33569245 (+) True XLOC_000395
TCONS_00000669 mRNA upstream 195856 33383644 ~ 33487375 (+) False XLOC_000393
TCONS_00000673 mRNA upstream 197297 33401774 ~ 33485934 (+) False XLOC_000393
TCONS_00000682 mRNA downstream 3266 33697170 ~ 33722780 (+) False XLOC_000399
TCONS_00000686 mRNA downstream 275111 33969015 ~ 34200954 (+) False XLOC_000402
TCONS_00000687 mRNA downstream 275133 33969037 ~ 34201195 (+) False XLOC_000402
TCONS_00000689 mRNA downstream 487677 34181581 ~ 34195689 (+) True XLOC_000402
TCONS_00000690 mRNA downstream 509913 34203817 ~ 34232249 (+) False XLOC_000404
TCONS_00000675 other upstream 227999 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000663 other upstream 466513 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other upstream 467148 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000661 other upstream 977004 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000657 other upstream 1169127 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000684 other downstream 41114 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000685 other downstream 273253 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000688 other downstream 428976 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000695 other downstream 706336 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000699 other downstream 991541 34685445 ~ 34688642 (+) False XLOC_000410

Expression Profile

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