RNA id: TCONS_00000678


Basic Information

Item Value
RNA id TCONS_00000678
length 5977
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_000397
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33647682 ~ 33663705 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACAAGCAGTATGGCGGAAGAAGAGAGTGAATTGGAGTTAGACAGGTTTAAGAAAGAACTGGAGACTTTGTTGAAGATTAGTGCAAGCGACGAACGCGGGCTCCAGAGTAAGACGTACTGTGAACGGTTTTGTGAGTTGGTAGTGGAGCATACTGGACGATGGCAAGTGCCTCTTCCCCAGCTCCAAGTGTTGCGGAGTGCCCTATGCTCTTTTGTCCAGGGTGTAGCATCATTCCCTCCTGAGTGTGAGCATGTTCGCTATACTCTGAGTAGTCTGGCCCTgaGTATATTTGAACTGCTGTTGTTCTTTGGAAAAGATGAATTCATCGAGCATCCTTTAAAAGACATTCTAGACTCATTCCAGgtctGCTATGCGAGCCTTGTGAGCCACCAGAATGTTTACCTTCTGCAGGTTAGACATATCATTAAAGATGGAGGACCTTGGGCAAGTCCTGTACTCGAGGCCATTCTTAAGGATTCAGAGTTACCACAAGAAGATGTGGACAAATATCTGAGCTCTGAAGCATCCATTTTCTTTGAGCTGCGTTTGCGTTACCTGGTGGCATGTGAAAGGCTTCCTGAGGCTTTGGCACTGACAAGGAGATGCATCCAGCATTCTGTCGTTGGAAAGTACCTCTATTACAAGCAAGCCTACCTCATCTGTCTTTGGAAAGCAGCTCTTCATCAGTGCTTGAACAAGGAGATGGCAGACATTGATGGCAAGGATGCTGTTGAGATACTCTGCATGATGGAGAATGAGGAGAAAGATGAGACTGTTTTGATGCTGAGTAAAAGCTTCCTATCCCAAAAGCTCCAGACAGGAGACATGTACTACCTTTGggaTTTGGTCTTCATATGGAGCAGACTCTACATGAGGCTGAACATCTCTAAGCAGGGCTTTCTAGAGGAATGCAAAGTAATGATTCTTTCAGCCACCAACATAAAAGCAATTTTCCCATTCATGAAGGTGGTTTTGACAGAGtttGGAAAAGATGGCCGGGAGTTTTGTGTGGAGCTTTGTGCCCGAGCCTTACAGACCGACCTTCAAAATGATCCAGCCACCAAGACACTGTTCTACAAAACTGTTGCATACTTGCTCCCTAATGACCTTGAGGTCTGTAGGGCTTGTGCACTGCTCATTTTCTTTCAAGAGAGAACTGTTGAATCATACAAGAATGTGTTCCTCTTGTATATCCACCCTGATCAACAGTACCATGTAGACACTGGTCTTGTGGGCAACAGTGTACGATTTGAGGTTCTCCAGATCCTTAAAAAAGACCTGTATTTTGACCCTGAGTTCTGGAGCATTCTCAACATTGAGACAAACTGTTTAAAGCTAATGAGTGATAAGGTTGGCAAAGCAGCTTTATGTGAAATCATGCAAAAGGACAAGTGGTTGCCAAGCTACTGTGTAAAGGGATGTTGTCAGTGTCATTCAAACGACACAGACAGGACTGTCAGTAAAGCAGAAAATCATACTAGTCATATTGACCAAGAAACAACATCAATGAAAATGTGGGTTAAATTTCCCTCAGAAGATGCATCCTCCAAAACTCCAAGCAAAAAACGGGGAAGAAAGCCAGGCACACGACttgtaaaaaattcagatgcCTGTCCAGTTCGACGTTCATTTAGGCAACTGGACTTGGAAAAGGATTATGAGAGGAAACTTAATAGCAGGCATCAGAGACGCTCTCGACAGACAGAGATGAACACACTGAAACGGAAGGGAAGAAAGCCACAATGGCTTTTGGACCAATTAGCTGGCCAATCAGAAAACAGTGAGCCACGACAAGTCAAGAAGCCAGGAAGGAAACCAAAGGAGTCACATATTTTGAGGGAGATTTTACTTGAGCCACCAGTCAGTGAAATCACAGTGGTATTTTCCTACCCTGATAATGAAGTTGACATCGCTCCTAATGTTCAggccacacaggtttctgcagaGACTCCTCACATGACAGAAAAAAGTACTGACAAAACCTCATCTCTAGAGAATTTAAAATGGCCTCACAGTGCTCTGTCTCTTCTCGAGTTACTGTCTGCAGAATCTCCTCCACGTAGCAAAAAAGACTTGAGGATGAAGGATGAGTTTGTTTTCCGGGAGCAGGGACCTTCTATGGTTCGAAAATTCCACACATATTCAAGACCTGTTGAATTAGAAAAAATATCATTCAACAGTTTACCCAGAGAGCAAGAAGCTAAGCTGAACCATAATGAATCCAAAGAAGAAAGTGTGGCTACAGAGCAACTGTGTGAACCTGCAGAGAGCCCTGAAGTTGTTGAACATGTTAAACAGTCTGTCGAAATTAAGTCTACACCAATCCCAGCTATAACAGCAGAAACAGCCCCTTCTGTTGAAGCCATTCGAGAGCCAGTTAAGGAATGCACAGAAGATCCAAAAGTTGGCGAGTTTTCAAGCCCTCAAGATACAGACATGCAATTTCCATTATATGGTCCTTACAGTCCTATTAGTCCTCCAGAAAGTACTAATGTTGACAATGAACCTGAATTGTCAACTCCCACCATATCTGACACTATTTCTGCAGAAGGGACAAGTCTCACTACAGCTGCCACAATATCTCTATCTGATAGTACACCAGAAAACATTACCAGTCTTCCCGAGGAGGCTCCTCCAGTTCTCACTGAAGTTGCAGTGCTCCCTGATGATACAGTGGCTAACACTTATGCTTCATCTGAAATTGTGCCTGAGAGTACAGACATGTCAGTGGTGCCACCAAGAACCAAGGAGATAACGGAAATGAATGCTGCTGTTGATGATCTTGTAGCCAACCGTATCCCCCAAAGTGACACAAGTTGCCAGCTTTCAGTCAACTGCAGCTATtgcaataaagaaataaaattccCACACATTCTACGTCATGCACTGTGGCATCATCGGATcgaaaaaaaatgcatgttttgtCACAAACGCTACGCTCATGGGCGCAGCCCATCAGTCCATTTTAAAGTCCACATTCAGCAGCTGAAACAGTCTAATggacttttaaataaaaacattcctAAGAAAGCAGCTGAGACCAGCTCACAGCGTGTTCAAAAGAGACGGGTAAAACGTGGCCGTCCGCCCATTCGGAATAAGCTTAGAAACATTAAAATGAGGTTAAACTGTACTTTGAACATCGCAGATATGCACAAGGATGGGCAAAACTCAGATCAAGTAAGACTACGGACAAGGTTAGTTAAAAATTCAGATCCTGGAAAGGCAACGAAAGAACCAAAGGAAAAGGCTAGTAAGATGAAGAAAAGGCATTTAAAAAGGGTATTAGTTAAGAGACCTCAGTCCAGAGATGAGAACAAAAagcttttcagaatgagactagAATGGAAAAGAACGAAGACTATACAAGCACCAACTCCGAAGGACAACCACTTGGAGAGCAAGAGCAACTCCGCTCCTAGGGTAAATGGAGTGatcagaaagaaaaggaaagataAGAGTGTATCTGAGACAAATCTCTCGAATGAAATTGCTCAGACATCAGTACCCCATGAAATCAGAGTAAAAACAGAGAATGTAGAATGCTCAGAAAGTCAAAAAGGCACAGAAATTCAAAGAGACAAAGAAAGTCAAAAGGACATTGTCAAATGTCAATCTGAGAATGCAGGTGTAATAAAAGACAAGATCAAATCAAAATCGAAAAGAACAATTGAAATGCTGAAAACTGTGCTGAAAAAGAAGATTGCGCCTGAGGAGCAAAAAGAGGATGGAGATGCTGTAAAAAGAAGGAAAATAAGCAGTCCAGAAGTCAGTTCTGAGAATCAGCAACCCAAAGACAGTAATACAGTACAGAAGGAAGTAAATGCAGTGGAGAACAAAAATGGCACTCAGAAAAAGTCAAAAGTGCCTTCCACACCATTCCAGGGAAAAAGAACCGGAGCATCCACACAAGTCAAATGTCCTGTGGAGATTTGCACATTTAGTGCAAAGTCAATACTTGTCCTTTCACATGTGCTCTCTCACCATCTCAGTGACAAGAAGGCGCTTGTGTTCTTTTATGACTTTGGAAAGGAAAAATGTCTTTACTGTTGCAGGAAGATATGTAACCCTCAGCATTTTTTTGATCATGTGATGAGTCACAGAGGCGAGTTAAAGTTCCCATGCTACCATTATGGCTGTAAGCAGAGGTTCCGTACGCGCATGGAGCTTAGTGAACACGTGTTAGTCCATCTTCCATTGAGAGCAATGTGCTGCTTTCCTGGCTGCTCTATGCAGCTTCAGAGTATGATGCTCCTGTATAAGCATGAAAAACTGCATTATGAAGAAAATCCAAATTTGGAAACCAAATCAATCCTGTGTAAAGAATCTGAACCATTAGTTCATGCAAGACTAGAAGATGGTATGGTGGCAGCAGCAAAGTCTTCAGTCAATCAGCTCACTACAACCATTTTGAAGGATTCTTCATCAGGAAAACAAGATGATGAAGAAAAACCTTTAGTTCTCAATAAAAGTTCTGTAAACTACAGTAGCAAGAACCACAGCCTTGTTAATGGGCATGATGAGACTGATAAAGTTGTTCCTCAGAAACCTTCAGATCCAGTCATTAAAGTGCAAGAAGCACCGGCtgcaaaaaaacagacaaataaacaatttattcgACCTCTCCCCTCATCTTATCTTGATGAGTCTTACACTAGCATGCCAAAACGCTGGAAGGAACTCCAGGTGGGCTCAAAGTTGCCAGGCACTGTGTCAATTCCAGAAATACCGCCTACCAGGCAACGTTGCTCTCGATGTTTTCAGTCATTTGACAGTGAGGAAGAGCTGCAAAAACACAAGGACAAATGCACATCGCTCTTTGGTTTCGATTCAGATGATGAAAGTGCCTCCTGAATTTGGAGAAGCAGCCTTTTCTACGGCGAAAACTGCTCAACGCTGCTGTAGGCAATCACCGTTCTTACATATGTGCTTAACATCTTTATCAGCATCTTGAAATGGAACTGAATGGGAAATAACTGATCCCTGTCTGTAGTCTTGTGTGACCTATCTGCTGCTTTTTTATAGCAGGTCTATTGCTAAAgctcatgtttttgttttttaacaaatcaTTAGTCTTTTTAAGACTTAGGGTTACAATATTTTTGTTACGTAATTGTCtgctttttcagaaaaaaaaagaatatgtttGTCTTTCTGTAAAATGCACAGCAGATGCGTTTTTGGCCTCTGTTGACTCTTCCTGTCCTTGTTTTGTCATTTCTGCTTGTCTTTTCAATTACTGGGTTTAAGAGGCCACCAATGACCCTAACACTACAAATTAAGAGTAAAAAAACTACTCTAAAAGGAAAAGTGCAAATGTTGTGATGgttaataaaggtttaaagtaGTGACAGTGGGTCAGGTGTCTACCAGTATTACATGCTGCTTTTTGAGCATGGATGGAAACTTGCAGGACACTCAAAGTATTGCAAGCACACTTTAAGTatgttcttttattattatttttttttaatccaaactTGATATGTGAACCTTTGTAAAAATACTGATTGCATCTTTTACAAATGTTATAAACTTCAAGACACTTGGGAAAAGTTAAAGACACGAAGTCTTTAAATGAAGGACTGTGACTTCTTTTCAGAAACTTAAAAGAACTGTTGGCCATAACAGCAGGCTGGTGCTGCTGGAAAGGCCGAGTCTTTAAGGCTGAAGTTTCTCCTGTTAACAGAGGAGTGTATATGTGCCACACAGCCTCATTGAACATTGTCATGACATATTTGAAGTGTCTTCTCTGTAACTCAAGAAACTCGAGAGGAGGACTAACTCATGTCTCAGACAGAGGCATGTTTAAAGCTGTTCCACAGATGAGCAGCACCAgtcttatttattcagtttttgttttatatctTCTGTAAATGTTTGAAGAGATTAAATAGTATATGATTGGATTGGGTGACTGGGTTTATATATCGAGAGCTTTTTTGGTCctaattaataaacacatttaaaaagtg

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1423 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF654 (zinc finger protein 654).

Ensembl:

ensembl_id ENSDART00000114384

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002850 lncRNA upstream 128859 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000651 lncRNA upstream 1629567 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 1635304 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 1635888 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 2126710 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00000683 lncRNA downstream 33636 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 567898 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 568033 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 786954 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00002852 lncRNA downstream 1193663 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00000677 mRNA upstream 12378 33634186 ~ 33635304 (+) True XLOC_000396
TCONS_00000676 mRNA upstream 78437 33558555 ~ 33569245 (+) True XLOC_000395
TCONS_00000673 mRNA upstream 161748 33401774 ~ 33485934 (+) False XLOC_000393
TCONS_00000672 mRNA upstream 161750 33401774 ~ 33485932 (+) False XLOC_000393
TCONS_00000674 mRNA upstream 179290 33401830 ~ 33468392 (+) False XLOC_000393
TCONS_00000679 mRNA downstream 4531 33668236 ~ 33684216 (+) False XLOC_000398
TCONS_00000680 mRNA downstream 4539 33668244 ~ 33694795 (+) False XLOC_000398
TCONS_00000682 mRNA downstream 33465 33697170 ~ 33722780 (+) False XLOC_000399
TCONS_00000686 mRNA downstream 305310 33969015 ~ 34200954 (+) False XLOC_000402
TCONS_00000687 mRNA downstream 305332 33969037 ~ 34201195 (+) False XLOC_000402
TCONS_00000675 other upstream 192450 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000663 other upstream 430964 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other upstream 431599 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000661 other upstream 941455 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000657 other upstream 1133578 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000681 other downstream 19526 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000684 other downstream 71313 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000685 other downstream 303452 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000688 other downstream 459175 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000695 other downstream 736535 34400240 ~ 34400354 (+) True XLOC_000407

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_03259617_03273490.mRNA True 6302 mRNA 0.42 9 CI01000049 3259174 ~ 3274591 (+)