parn (parn,LOC103366231,LOC102788671)


Basic Information

Item Value
gene id parn
gene name parn,LOC103366231,LOC102788671
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14242155 ~ 14252847 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805465.1
CGGAAGTGTTTGTAAAACGGTTAAAAAGCCAGTTGACGtaggctagctaacgttagctgtcagccgGGTTCAGTCATTGTGCAGGGATGGAGGTGACACGCCAAAattataaagacagtttAAACACGGTGTACAGCGCGATAGAGGAGGCTGACTTCCTTGCCATCGATGGAGAATTTTCAGggatAAGCGACGGTCCTAATGTCAGTGCACTCACCAACGGACTGGACACACCGGAGGAGCGATACACGAAGCTTAAAAAGCACTCAATGGACTTTCTGCTGTTCCAGTTCGGATTATGTACATTCACGTACGACCAGACAAAGTCAAAGTATATCACAAAGTCTTTTAATTTTTATGTATTCCCGAAACCGTTCAACAGGACATCCCCCGACTTAAAGTTCATCTGTCAAAGTTCCAGTATCGACTTCCTGGCCAGTCAGGGATTCGACTTCAACAAGGTGTTCTGTCATGGAATCCCATATCTAAACCAAGAAGAGGAAGCCCAGCTGAGGGAGCAGACCGAGGAGAGGagaaatcaacatgctaacggTGTAGGGACACCATCCTACAGCTCCCCCTCCTCCAAAGGCCCTGCACACGTACCTGAGGAGCATAAAGACTACATCAACAGGGTGATAGAGAAGGTTGAGGCCCTCTTCACTAACTCAGAGAAGACTTTGGACTTGGACCCATGTACTGGGTTTCAGAGAAAGCTGATCTACCAGACACTGAACTGGAAGTTTCCCAAGGGGCTTCATGTGGAAACTGTGGAAACAGAAAAGaAGGAGCGATACATCCAGGTCAGCAAAGTGGATgatgaggagaggaagaggagggaacaacagaaacaagagagagagcagGAGGAGCTAAATGATGCTGTTGGCTTCTCCAGGGTCATCCACGCCATCTCTAAATCTGCTAAACTTGTGGTTGGTCACAACATGCTGTTGGATGTAATGCACACAATCCACCAGTTCTACTGCCCTCTGCCAGAGGATCTTCAAGACTTTAAAGAGATCACAATGTGTGTCTTCCCAAGAATTCTGGACACAAAGTTGATGGCTTCCACTCAGCCCTTTAAGGAGCTGATCACTAACACATCTCTGGCagagttggagaaacagctgaagGAGAGCCCCTTCAAGTCACCACAAGTTGAAACTGCAGAGGGGTTCCCCGGTTATGACACAGCCCAGGGACAGCTCCATGAGGCTGGGTACGATGCCTACATCACTGGCCTCTGTTTCATCTCAATGGCCAACTACCTGGGCTCTTTCTTGACTCCACCCAAAGCGTACATCTCTGCTCACTCCAAACTAATTGAGCCTTTCTTCAACAAGCTTTTCCTGATGAGGATAATAGATATTCCCTACCTCAACATCACAGGACCAGATTTGCAACCTAAAAGAGACCATGTCCTGTATGTCACCTTCCCAAAAGAATGGAAGACTAGTGACCTCTACCAGCTCTTTAGTGCCTTCGGAAACATCCAGGTTTCCTGGATAGACGACACGTCAGCATTTGTGTCCCTAAGTCAGACGGACCAGGTACAGATAGCTATGAACACCAGCCGCTACGCAGAGAGTTACAGGATCCAGACGTATGCAGAGTACATCCAGGGTAAGCAGCAGGACAAGGAGAAGCTCAACCAGACGCCCAAATCTTGGGGAGAGGACGGCTGGATGAAACCTCCCTACACCTCCGCTACTTGTGCTGGTTTTGGATATGCCAGGGGTTTGAGGAAACGCAGCATCAGTCCCACTCAGGGAGAGCAAGGGGCCGGAGACGCTCCAATTACAGACGGCTGGAGTCAGTGCTCATACCCGAATAGCACAGGCAGCAAGAAGATGAAAACTGATGACAAAAGTGGACTAGCTATCGAGAGCAGGACCTCAGAAGGATGGCTAAAGACTGCAGATGCATCAGATTCAGCGGGGTCCAGTCCAGTCCCTGATGAGGAGGAGCGAAGTCCTGAAGGCAATGATGCTGAGGGGACGGTCACCTGGCAACAAGTCCATGGGAAGAGAGGTcaaaagaacaagaaaaagaagTCCAAAGGGGCTAAATCTACAACGTCGCTGTTTGAGGTCCCGGAAGTCTGGTAGCGAGAGGCGAGGAGTGGAGAAGCCACTATGTCACCATGAGCTCCTGCTCGGAGTCTCTTCCTAAGCACTTAAGGTGCTCTTCTGTAAGGATGCACATCACTAGGAATGGTGCACGCCCTAAATTAATTCGTTCACTCAACAGCTGTGGATACCGTGTCCAAAGCTACCAGCCAAGCTTACTTGACTGGACTATTGAAAGAGAGAACACAAGCCATAACGACAGCTGCCATATTTTGATCTTTTAGCGAAGGGGCGAGCAACTCTTCTGGGTAAACGCACATTCTTTACTAGAATCGAAAAATCTGAACTCAAAGAAATGTTCATTTATTCTGTGTTGAGACTGGAATCTGCCACCACAGCCATGCTGTCAATTTGAAAAGATTCATTTTTAACGACACCGGTACCTCCAATCAGTCTTATATTTTGTGAGTGAGTTGTGTGCGAGTTTGTGCATGTGAGGGAGATCTTAATTTTCTCCGGTCTCTGTATCCCTGTGAAGCCCTTTCATAAATCGTGAGATAAAATGCCACCGGACAGGTCCTGTAGTTTACAATGTCTGGGTTATTTAGTattttatccattttttttttaaatgtaagtttTGTCAACTTCCCCAGTTTTATCAAAAACGTATATAAGCTTATCAATGATGTGACGTTTATTATTGGTGGCATTTTGATCCTTCATGAGAGGTGCTTGTGTTCTTTTTGTACAGAATTGTTTTTCTTTACCCGTTTAATGTTTTGTCACTGTCCAATCTGCAACAATGTAAAAGTATGTTCTAATGCAAAAGGTGTAAACGTTAAGACGTATACATTTTTGTATAACAAAGTTTAAAAACACTTATTTCCttggaaaggggaaaaaaattaaagaattGTTTCTTAGTA

Function

symbol description
parn Predicted to enable RNA binding activity; cation binding activity; and poly(A)-specific ribonuclease activity. Acts upstream of or within hemopoiesis. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease).

NR:

description
PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X1

GO:

id name namespace
GO:0006402 mRNA catabolic process biological_process
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01148 PARN, PNLDC1; poly(A)-specific ribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805465.1 True 3001 mRNA 0.46 26 14242155 14252847

Neighbor

gene id symbol gene type direction distance location
eri2 eri2,LOC106594655 coding downstream 12250 14225177 ~ 14229905 (-)
thumpd1 thumpd1,LOC102789252 coding downstream 17756 14221724 ~ 14224399 (-)
LOC120557653 LOC103366227,LOC103383461 coding downstream 38901 14181150 ~ 14203254 (-)
LOC120567413 LOC104965219 coding downstream 63109 14150329 ~ 14179046 (-)
LOC120558610 NA coding downstream 95313 14141315 ~ 14146842 (-)
mad1l1 mad1l1 coding upstream 189532 14442379 ~ 14515836 (-)
LOC120567649 LOC103373062,LOC102206023,LOC101469992,LOC102313636,LOC102077197,LOC102776633 coding upstream 305048 14557895 ~ 14590616 (-)
LOC120567658 LOC103373371,LOC101468855,LOC102204912,LOC104921159,LOC102786911 coding upstream 363342 14616189 ~ 14645852 (-)
iqce NA coding upstream 394172 14647019 ~ 14664075 (-)
palb2 NA coding upstream 445835 14698682 ~ 14710968 (-)
LOC120558606 NA non-coding downstream 133462 14105951 ~ 14108693 (-)
LOC120558586 NA non-coding downstream 163156 14078317 ~ 14078999 (-)
LOC120558581 NA non-coding downstream 170608 14067848 ~ 14071547 (-)
G4359 NA non-coding downstream 185698 14055443 ~ 14056457 (-)
G4354 NA non-coding downstream 196436 14045360 ~ 14045719 (-)
G4443 NA non-coding upstream 44242 14297089 ~ 14297452 (-)
G4450 NA non-coding upstream 186609 14439456 ~ 14439663 (-)
G4566 NA non-coding upstream 598114 14850961 ~ 14852833 (-)
G4658 NA non-coding upstream 716634 14969481 ~ 14970706 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding upstream 718533 14971380 ~ 14973191 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 199645 14018902 ~ 14042510 (-)
G4168 NA other downstream 674889 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 1201875 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 1213762 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 1376116 12865968 ~ 12866039 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 459297 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 648299 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 1173697 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 2092871 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 3159206 17412053 ~ 17421098 (-)

Expression


Co-expression Network