thumpd1 (thumpd1,LOC102789252)


Basic Information

Item Value
gene id thumpd1
gene name thumpd1,LOC102789252
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14221724 ~ 14224399 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798208.1
CGTCACGCGCCGTACGGCGCAACCAAAAAACGTGCTATGTTGTGAGTGCCTGAATGAGACATCGGTCCTCTGAAACAGCTGAAGTTCATTCATTTGAACACACATTTAAGCGGGCAGTCTGTAGCTTTTTGTAACCTTCACATGACTTTTACATTGTAGTCGCTACAGCTTTAAAATACCGGAAATTTTAGTCTCAACTGTTAAGCTAACGGCTAATAAAGCCGAGGAGGAGTAACCAAAACAACAAGTTAGCCCGCTGCTATTGAGCTTAAACACAAGGTTTTGATTTGTACCTAAGCTTGTCTGCTAATATGTCGGCCGTGTCTAACGACTCGAGGAAACGGAGCAAGAAGCGGTATGCGGGCGGTCACCACAACAAGCGGTGGAAGGGCTCCCGAGAGCTGGAGATAGGCATGCAGGGGATCCTCATCACATGCAACATGAACGAGAGGAAGTGCACCGCGGAGGCCTTCAATCTGCTCAATGAGTACGCCGACACGCTCTATGGGCCCGAGAAGTTGCAAGATAATAATGGGAGCAGTAGTGAAGAGGAGGCTGATGAAGAAGATGTTGATGTAGCACTGAAGAAGGAAGTGGCACAGCTGAAAGCATCTGGAGCTAAACAGGAGAGGCGCTTCCAGGCTTTGGACAGTGGAGCAAACAATGTCATCTTCATCAAAACTAAAAATCTAGAATCTGACAAGCTGGTTCATCACATCCTCTCCGATCTCCACACCACCAAGAAGAAAAAGTCACGTGTGATCCTTCGGATGCTACCAGTAACTGGAACGTGCAAGGCCTTTCAGGATGACATGGTGAAGTACCTGACTACTTTCCTGGAGCCCTGGTTCAAAACCCCAAACAGTGGTACCTACCAGATCGCCTTCAAGGCCCGCAACAGCAGCCACAACAAGAGAGACGAAATCATCAAAGCAATTGCAGGTCTCGTGGGGAAGCTGAACCCTAAGAACAAGGTTGATTTGACCAACCCAGAACTGACAATCATTGTGGAGGTCATCAAGGCTGTGTGTTGCATCAGTGTGGTAAAAGACTATACACTGTACAGAAAGTACAATGTCCAGGAAGTAATGAAAGAGGACACACCAAAGCCTGACGTGACCACAGCAAAAACGGATATGAATACAGCTGACCAGAAGGAGAAACACGATGCAGAGGAGACAaacaaagaagagaagaaaggggATGACAACAATGGGCCACAGGAAAACAAGGAGGCTGATAAGGAAGAAGTTGACGGGGAGTAAGAGCTCACATTTAGAGAAGCTGATTGTCAGTCAGATTTTAAATTTCTAAAAAAAAGTTCATCTTAACTTGCATTATATTGTagtgattttgttttaaattgaagTTTCAAAGCAAAGATTagccaatttatttttttcacaacttAACCCACAACTTGAGTCCTCCTTTATCAGAATCCTGATATaatttaatgtctttttttatattcataaaGATATCTATGATATGTTAGTACCAACTTTATTGGGGtgttcatttttaaattaaggTGATTTAAAATTAACTGAACGTCACCATTCTGCAGCACAACTTCCATCaactcagtttaaaaaaaatgttgaattagATTTATAATTTcaatgtcattttatttattttgacatttttactaaAGCAAAAGGGTTTTGTTCAGATCAACTTGTGTGTCACATTTAGTAACTCTGTTTTTTTGTAACTGTTATTTCCTAAAGCAGTCCCTAAATTAAAGTTACCCgtgtatttgaa

Function

symbol description
thumpd1 Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Is expressed in female organism. Orthologous to human THUMPD1 (THUMP domain containing 1).

NR:

description
PREDICTED: THUMP domain-containing protein 1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06963 TAN1, THUMPD1; tRNA acetyltransferase TAN1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798208.1 True 1770 mRNA 0.42 5 14221724 14224399

Neighbor

gene id symbol gene type direction distance location
LOC120557653 LOC103366227,LOC103383461 coding downstream 18470 14181150 ~ 14203254 (-)
LOC120567413 LOC104965219 coding downstream 42678 14150329 ~ 14179046 (-)
LOC120558610 NA coding downstream 74882 14141315 ~ 14146842 (-)
LOC120558598 NA coding downstream 88792 14127465 ~ 14132932 (-)
LOC120558590 NA coding downstream 125855 14093285 ~ 14095869 (-)
eri2 eri2,LOC106594655 coding upstream 778 14225177 ~ 14229905 (-)
parn parn,LOC103366231,LOC102788671 coding upstream 17756 14242155 ~ 14252847 (-)
mad1l1 mad1l1 coding upstream 217980 14442379 ~ 14515836 (-)
LOC120567649 LOC103373062,LOC102206023,LOC101469992,LOC102313636,LOC102077197,LOC102776633 coding upstream 333496 14557895 ~ 14590616 (-)
LOC120567658 LOC103373371,LOC101468855,LOC102204912,LOC104921159,LOC102786911 coding upstream 391790 14616189 ~ 14645852 (-)
LOC120558606 NA non-coding downstream 113031 14105951 ~ 14108693 (-)
LOC120558586 NA non-coding downstream 142725 14078317 ~ 14078999 (-)
LOC120558581 NA non-coding downstream 150177 14067848 ~ 14071547 (-)
G4359 NA non-coding downstream 165267 14055443 ~ 14056457 (-)
G4354 NA non-coding downstream 176005 14045360 ~ 14045719 (-)
G4443 NA non-coding upstream 72690 14297089 ~ 14297452 (-)
G4450 NA non-coding upstream 215057 14439456 ~ 14439663 (-)
G4566 NA non-coding upstream 626562 14850961 ~ 14852833 (-)
G4658 NA non-coding upstream 745082 14969481 ~ 14970706 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding upstream 746981 14971380 ~ 14973191 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 179214 14018902 ~ 14042510 (-)
G4168 NA other downstream 654458 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 1181444 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 1193331 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 1355685 12865968 ~ 12866039 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 487745 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 676747 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 1202145 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 2121319 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 3187654 17412053 ~ 17421098 (-)

Expression


Co-expression Network