RNA id: XM_039798208.1


Basic Information

Item Value
RNA id XM_039798208.1
length 1770
RNA type mRNA
GC content 0.42
exon number 5
gene id thumpd1
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14221724 ~ 14224399 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCACGCGCCGTACGGCGCAACCAAAAAACGTGCTATGTTGTGAGTGCCTGAATGAGACATCGGTCCTCTGAAACAGCTGAAGTTCATTCATTTGAACACACATTTAAGCGGGCAGTCTGTAGCTTTTTGTAACCTTCACATGACTTTTACATTGTAGTCGCTACAGCTTTAAAATACCGGAAATTTTAGTCTCAACTGTTAAGCTAACGGCTAATAAAGCCGAGGAGGAGTAACCAAAACAACAAGTTAGCCCGCTGCTATTGAGCTTAAACACAAGGTTTTGATTTGTACCTAAGCTTGTCTGCTAATATGTCGGCCGTGTCTAACGACTCGAGGAAACGGAGCAAGAAGCGGTATGCGGGCGGTCACCACAACAAGCGGTGGAAGGGCTCCCGAGAGCTGGAGATAGGCATGCAGGGGATCCTCATCACATGCAACATGAACGAGAGGAAGTGCACCGCGGAGGCCTTCAATCTGCTCAATGAGTACGCCGACACGCTCTATGGGCCCGAGAAGTTGCAAGATAATAATGGGAGCAGTAGTGAAGAGGAGGCTGATGAAGAAGATGTTGATGTAGCACTGAAGAAGGAAGTGGCACAGCTGAAAGCATCTGGAGCTAAACAGGAGAGGCGCTTCCAGGCTTTGGACAGTGGAGCAAACAATGTCATCTTCATCAAAACTAAAAATCTAGAATCTGACAAGCTGGTTCATCACATCCTCTCCGATCTCCACACCACCAAGAAGAAAAAGTCACGTGTGATCCTTCGGATGCTACCAGTAACTGGAACGTGCAAGGCCTTTCAGGATGACATGGTGAAGTACCTGACTACTTTCCTGGAGCCCTGGTTCAAAACCCCAAACAGTGGTACCTACCAGATCGCCTTCAAGGCCCGCAACAGCAGCCACAACAAGAGAGACGAAATCATCAAAGCAATTGCAGGTCTCGTGGGGAAGCTGAACCCTAAGAACAAGGTTGATTTGACCAACCCAGAACTGACAATCATTGTGGAGGTCATCAAGGCTGTGTGTTGCATCAGTGTGGTAAAAGACTATACACTGTACAGAAAGTACAATGTCCAGGAAGTAATGAAAGAGGACACACCAAAGCCTGACGTGACCACAGCAAAAACGGATATGAATACAGCTGACCAGAAGGAGAAACACGATGCAGAGGAGACAaacaaagaagagaagaaaggggATGACAACAATGGGCCACAGGAAAACAAGGAGGCTGATAAGGAAGAAGTTGACGGGGAGTAAGAGCTCACATTTAGAGAAGCTGATTGTCAGTCAGATTTTAAATTTCTAAAAAAAAGTTCATCTTAACTTGCATTATATTGTagtgattttgttttaaattgaagTTTCAAAGCAAAGATTagccaatttatttttttcacaacttAACCCACAACTTGAGTCCTCCTTTATCAGAATCCTGATATaatttaatgtctttttttatattcataaaGATATCTATGATATGTTAGTACCAACTTTATTGGGGtgttcatttttaaattaaggTGATTTAAAATTAACTGAACGTCACCATTCTGCAGCACAACTTCCATCaactcagtttaaaaaaaatgttgaattagATTTATAATTTcaatgtcattttatttattttgacatttttactaaAGCAAAAGGGTTTTGTTCAGATCAACTTGTGTGTCACATTTAGTAACTCTGTTTTTTTGTAACTGTTATTTCCTAAAGCAGTCCCTAAATTAAAGTTACCCgtgtatttgaa

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06963 TAN1, THUMPD1; tRNA acetyltransferase TAN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639156.1 lncRNA downstream 113031 14105951 ~ 14108693 (-) True LOC120558606
XR_005639155.1 lncRNA downstream 142725 14078317 ~ 14078999 (-) True LOC120558586
XR_005639154.1 lncRNA downstream 150177 14070847 ~ 14071547 (-) False LOC120558581
TU5970 lncRNA downstream 150437 14067848 ~ 14071287 (-) True LOC120558581
TU5962 lncRNA downstream 165267 14055699 ~ 14056457 (-) False G4359
TU6056 lncRNA upstream 72690 14297089 ~ 14297452 (-) True G4443
TU6065 lncRNA upstream 215057 14439456 ~ 14439663 (-) True G4450
TU6214 lncRNA upstream 626562 14850961 ~ 14852833 (-) True G4566
TU6324 lncRNA upstream 745082 14969481 ~ 14970706 (-) True G4658
TU6326 lncRNA upstream 746981 14971380 ~ 14973191 (-) True G4659
XM_039798195.1 mRNA downstream 18470 14181150 ~ 14203254 (-) True LOC120557653
XM_039814376.1 mRNA downstream 42678 14150329 ~ 14179046 (-) True LOC120567413
XM_039799670.1 mRNA downstream 74882 14141315 ~ 14146842 (-) True LOC120558610
XM_039799654.1 mRNA downstream 88792 14127465 ~ 14132932 (-) True LOC120558598
XM_039799641.1 mRNA downstream 125855 14093285 ~ 14095869 (-) True LOC120558590
XM_039791172.1 mRNA upstream 778 14225177 ~ 14229905 (-) True eri2
XM_039805465.1 mRNA upstream 17756 14242155 ~ 14252847 (-) True parn
XM_039796274.1 mRNA upstream 217980 14442379 ~ 14515836 (-) True mad1l1
XM_039814595.1 mRNA upstream 333496 14557895 ~ 14590616 (-) False LOC120567649
XM_039814585.1 mRNA upstream 333496 14557895 ~ 14563099 (-) True LOC120567649
TU5715 other downstream 654458 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 1181490 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 1181490 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 1181490 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 1193331 12991667 ~ 13028393 (-) False LOC120560419
TU6167 other upstream 487804 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 676751 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 1202145 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 2121371 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 3486247 17710646 ~ 17713898 (-) True LOC120560175

Expression Profile