RNA id: XM_039814595.1


Basic Information

Item Value
RNA id XM_039814595.1
length 3285
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120567649
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14557895 ~ 14590616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgcaggTTTCAAACTTTTAAGCAAGATCAACTTGGCAACTGTTTAATGAGGAAGGAAATCCATTCAACACGTTTGCTGACCTCAATTCCAACAGTGTGTTTTGATCTTCAGTCACCAGCTGGCAACCTTCTCAACATCTCCAGGCTTTGAACATAAAGGGATCCGCACACGATCGGATTGCATCCCTGTAACGGACTAAAGGggtgaggaagaagagagagacagtgaggagGTCTGCATGATGTTTGCCTTCCTTGAAGGTGAGATTATCTATTAACAGCTTGTGGCGGAAAATCAGGTTCAGGCAGCCACTCTCTGGAGGAATGATTGTACATAGCGTAAGGACTGCACTGGGACCAGTGCTGAACAGCATGATGACTCCAGCTGACTCATCAGATGTGGCATAAGATGGGGGACCATGATTTACATTTGTCTAGAAATGTTTTTATCCACACAGAATAGAGGAACCTGCAGACCACATAACTGAAACCTGAAATGATGTGGATTATTATGGATTTTAATGAGGACCAAGGGACACCAGTACAATAAGCCCTACAGTCGAGAGATCTGCATACATCTCTGCTACCTTTTGGCTGTGGCTTTTTTTTCCGCTGGGAGAACGGCATGGATCTGTCCCAGGACCACCTGTCAGACTGGAGCTCAGTGCAGCCCAGCTTCTCTCCGCTGCTGCAGTACGACGGCTCTCAGGAAAGACTCAACCACACCTACGGCTTCCACAGCTCTGTAATGCTGTCCTCCACTTTCAGTTCCCCCACTGCCTCCCTCCATCAACCTCTGCCTTCTctgctcccctcctccctcattCCTTACTCCTCCCTCATCTCCTTCCCTTTATTCTCCACCACTTCAGCCTCATCCTCTCCACAAACATCCACTTTTGTCTACCAAgcctcctcctttcctttgtCCCTGTCCACCTTTCCTTTGAAAGACTTGGCCAACCTGGAGAGCATGCTGCTCTGGACTGTCCACGAGCCCAGCACGATCGCTCTGACCGTCATGTACTGTCTGTCTTTCATTTTGGGATTCATTGGGAACTTAATGTCCCTGCGCGTCCTCACCAACAGGCGGAGCCGGCGGCTAGCTGGTGTCAGCGCCACTCGCAGTCTGCTGGTGAACCTGGCGGTGTGTGACCtggctgtggtgtgtgtgtgcatgcccaTCACCCTGGGAAGTCAGATCTACACCGCCTGGGTGTACGGCGACCTCCTTTGTCGGGCGGTGCCCTTCACGCAGGCTGTTTCAGTCTCAGCCAGTGTGTTAACGCTGACTGTGATCAGCGTGAATCGCTACTACAGTGTTCGATCGCCACTGCGAGCTCGCTCCATGTTTACCCGCCGTCGAATCTTGGCGACTGTAGCCGTGGTGTGGACAGTGTCTTCGATCATGTGCGCTCCTATTGCAGTGATGAACCAGCGGCGGGAGATCAGCTTTGAGACATTTGCCATCTTGGTGTGTGAGGAGAGGTGGCCTCAGCATCGCCTTAAACAGGGATATAATGTGCTGCTGTTTGTGATGCTCTACTGCCTGCCAGTAACCTTTAACCTCACCATAGGCTTCCTAACTGGCAGGCGGCTTTGGGGTGGAAGAAAATCCACTTTCGCTGATCTCGACCCTCGCAGCGAAGCTCTGCATGCCTCGCGCCTAAAGACGCGCCAGAAGATCGCCAAGATGGTTGTGTGTCTTGTGCTGCTGTTTGCAGTGTCCTGGCTGCCGCTCTACTTGGTTGACCTTTGGATCGACTGCGAGCAAAGGCCGTCGTCTTGGCTCCTGCAGACACGGCCATTTGCCCAGTGGCTGGGCCTGACAAACTCCAGCCTTAACCCCATTTGTTACTGTTTCATAGGGGATCTGTACCGCTCAGCTAAAGTGATACGGACGCGATACTACCAGAAAGTCTCCGCTATATTCGGCTCCTCTTCATTCTCCAGCTCAGCTGCCGTGATGTCTCCTACTGCAGTGATTACAGACACCAAAGTGACTGCTGCTGAGCGGCACCATATTTCTGCCGCCGCTGTGGCAGCGTCTGCATCCATCGTTGCAATCCCCAGGCTGTTGAGCTTAGCTAGAGGACAGGGACTTGGGCGGAAGGTCGGAGACAGTTCAGACAGCCGAGCAGGATCCGACCACAGTATCTCAGACTGGTGTCGGTCCAGTCCCAGTGTGTGTGACAGCTCCTTGTTCCCCTGCCAGCCCCACACACTCCAGCACTCCATACAAACAGCAGACTTTCTGCCAACGAGAAGACACTCTGTGATGGAGAACGTAGGATCATTACCTTTAAGAATGGAGTCTGTGGACATAGACGTGCTGCCTTTGAGGAGGCATTCGGGGGACAGAATATATGGTCTGTCAGCTGATAAGAGAGACATCATTACCATGGGCAGAGACGCTCTCTGTTACTCTGGGCAGTACAGAAGCAAAACCTCACAAACCTACTATCTGGTAGGAGATGGGCAGGATGAAACAACCGATATGACCAGCCTGTGAAAGCTGCAGATTATCTGAAGAATCAGCATGGAGATTTTTTTCTTGTTAGTCCCACAGGCAGCAAAAACTAAATCGGCTCCTGATTCAGTTTGCAGTTGACAGTGTGGGTTTATCCCTTGCAAAAGCCATTTTTTGTCTTGAGGATAAACTGGCTTGGTCGAAacactccttccttctctgtATAGTATTCTTTCAGTATCATCGAAAGCACAGGGGATTCAGGATCAACGTTCACACAACGATCAGGTTTTTGAAGGCAGATGGAGGGAGCAGTGATGGAGTGAAGCCTGCAGGGGGAAGATCTGGGGGTTGTGTAGCCACGGGCCAGTTAACACCCAGAATCACTGATTAAAGCTGTGCACCATTACATGCAAGTCATATCATAAGGGATTTAGCTGCTAGTCACAGTCATGTCTGCTTAAGTCAATAACCCAGCAGGGTGCATATGTGTGATTAGTTTTGTTTACTTTATgttattctctttctttcttattgCTTTGCTAATGCAGGGACATAATGTATTAGAGCTTCTGACTGGTCTTTACAGGATAATGTCACCATCAATGTCTGCAGTCTGTGAAAAATGTGTACCATAGCAGCAGTTGTTCACTTGTGCAGTCATGCAGTTGATTTGCAGGGAATATGAGACATATTCTATATGAAAGAGACAATCTAAAACTTGCAATAGAATGTATGGTTTTGTTTTGCACATAACTCTGTGAAATTGCTTttaggtataaaaaaaaacttttaaggctcatcagatttttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6065 lncRNA downstream 118232 14439456 ~ 14439663 (-) True G4450
TU6056 lncRNA downstream 260443 14297089 ~ 14297452 (-) True G4443
XR_005639156.1 lncRNA downstream 449202 14105951 ~ 14108693 (-) True LOC120558606
XR_005639155.1 lncRNA downstream 478896 14078317 ~ 14078999 (-) True LOC120558586
XR_005639154.1 lncRNA downstream 486348 14070847 ~ 14071547 (-) False LOC120558581
TU6214 lncRNA upstream 260345 14850961 ~ 14852833 (-) True G4566
TU6324 lncRNA upstream 378865 14969481 ~ 14970706 (-) True G4658
TU6326 lncRNA upstream 380764 14971380 ~ 14973191 (-) True G4659
TU6335 lncRNA upstream 408525 14999141 ~ 14999689 (-) True G4663
TU6343 lncRNA upstream 422309 15012925 ~ 15013189 (-) True G4670
XM_039796274.1 mRNA downstream 42059 14442379 ~ 14515836 (-) True mad1l1
XM_039805465.1 mRNA downstream 305048 14242155 ~ 14252847 (-) True parn
XM_039791172.1 mRNA downstream 327990 14225177 ~ 14229905 (-) True eri2
XM_039798208.1 mRNA downstream 333496 14221724 ~ 14224399 (-) True thumpd1
XM_039798195.1 mRNA downstream 354641 14181150 ~ 14203254 (-) True LOC120557653
XM_039814629.1 mRNA upstream 25573 14616189 ~ 14645852 (-) False LOC120567658
XM_039814621.1 mRNA upstream 25573 14616189 ~ 14645850 (-) True LOC120567658
XM_039814641.1 mRNA upstream 56403 14647019 ~ 14664075 (-) True iqce
XM_039795113.1 mRNA upstream 108066 14698682 ~ 14710964 (-) True palb2
XM_039795121.1 mRNA upstream 112092 14702708 ~ 14710968 (-) False palb2
TU5715 other downstream 990629 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 1517661 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 1517661 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 1517661 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 1529502 12991667 ~ 13028393 (-) False LOC120560419
TU6167 other upstream 121587 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 310534 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 835928 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 1755154 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 3120030 17710646 ~ 17713898 (-) True LOC120560175

Expression Profile