LOC120573897 (LOC100708249)


Basic Information

Item Value
gene id LOC120573897
gene name LOC100708249
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6282748 ~ 6295167 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823803.1
tctTCCCTGGAAAAAAACTGGACAAAAAAGGGGGTAGAAATGTCACAAACTCTGAATATCTACCTCAttaacagaggaagaggagaggaataCAGAGAGGTCTTCAAGGGAAAGAGATCATGATACGACAGAACCTGGGTCGATCCATTCTCTCCATCTATCTGGTTCTGGCGTGTCTGTCTCTCGCTCTCCACCTCCTTCtggcatttttttgtctctctgtcctccagACAGTCTGTGTCCCTCccacctcttcctcttcctccattcCACGAACAGATATTCAGCAGCATCAGTCCATCTCACACTCCTCCTCTTCAGCTGTCTCCTCTTCACATAAACTGCCATCGATCTCCCACGATGAGGAGCATCACAAACTGAATGCCAACACCTTACACCGTAAAGAGAAAGACTCCATCAGTGATGCCACTGAGAGGGAAAAGAAACTGATTGGAGCTAGAAAAGGGATTCAAAAGGTCAAGGGCCATTCTAAGCTGGAGGCGTTGTTCGAGCACCCGCTGTACAACCTGCCACGTCCAGAGCTGCAGGACGATGATTGGCTGCTGAGGGTGAAGACAAATGAACATTCAAGTGATAGAGGAAGCGAGGAAGAGGAGATGAAAGAATCCAACGATGATGACAGTCAGTGGCAGAGTGCCAGTGAAGAGGAAAGCTACGACAAAGTCACTTGGACGAGCGATGTGGAGACCCACCCTCCCTGGCTACGGTTCCACCTGGGCATCTCTCGCTGGGAGCTGTACAACAGGAAGGATCCCAATCTGGCCCAGCTGACTCACTATTTGGCAACGCAACGTGTCCTCAGTGCTGTTCAGAAGACGGGAGGCACCCAGCTCAAACTGCTCCTGTCGTTCCCAAACTACGGAAAAGCTCTGCTGAAACCCATGAAACAATCCAGAGACGCCGAGACGAATGCAAACCTCTTCTACTTCTCAGACTTTGAAAGACACAATGCAGAGATTGCTGCCTTTCACCTTGACAGatTGTTGGGCTTTAACAGGATCCCTCCAGTGGTCGGTCGACTAATCAATGTCACCTCGGAGATCAGAGAGATTACCACTGACCGCAGGCTGTCTAGGACCTTCTTCACTTCCCCTGTGGGGAACGTGTGCTTCTATGGCCAGTGTGAGTACTACTGTTCAACAGAGCACCCAGTGTGCGGTCAGCCACATGCGCTGGAGGTTTCCCTGGCTACCATGCTGCCTGACCTCGCCATAGCTCCCCGCAGATCCTGGAGGTCACCATGGAGACGCTCCTACAGCCGCTCCAAGCTAGCACAGTGGGAGAAGGACCCGGCCTTCTGTGACACGGTGAAACAGACGCCTCCTTACAACCACGGCAACAGACTGCTGGATGTCATAGACATGGCTGTACTGGACTTCCTCATGAgCAACATGGACAGACATCACTATGAGACGTTTGAGAAATTTGGCAATGAGACTTTTTTGCTGCATCTGGATAATGGACGGGCGTTTGGGCGTCACTCTCGGGATGAGCCGTCTATTCTCACTCCTTTGAAACAGTGTTGCAgGATCCATCGCTCCACCCTCCTGCGCTTGCGTCTCCTGTCCCTCCCTGTCTTCCGTCTGAGTGATGTCATGCGGGAGTCGCTGGTCCAGGATCCTCTGGCGGGCGTGGCCCCCCTCCTCTCTGAACTGCACATCTCTGCTTTGGACCGACGCCTTGAAACCGTCCTGCAGGTGGTGCAGGCCTGTCAGGAACACCACACAGACGTTATTTACGACGACTTGGAAGGTTACGATCAAGACTATGATCAATAGCCTGACTGagtcaaaaaaatttaaaaaattacatatttCTGTCATATATCTGTGGAAATCATTTTGTCACATaatctgcatatgaatgcatGATTGCGTTAAGGTCAAAGCTGGtgaaacagacaaaaacaaaacgttTCAGATATAGTGCATGTACTACTTCACaagaaaactgtgaaaaaatcAGAGAAACATCAGAATAAAATTCAAACGATTGTCTTTCTTGTGCCTTAATAATCTGGGGACCCCGCCCTCAGAATGTATTAGATTAGGGGCCTGACCACTGAGTTGGGAACCATAGGTCACACAGGATGAAAGTAAAAATAGAATTTAAGTAGTGTAAAATCAGGATGACGTAGTGTAGTGTTACACACTCGCATTATACAGTCATT

Function

NR:

description
PREDICTED: extracellular serine/threonine protein kinase FAM20C isoform X2

GO:

id name namespace
GO:0042221 response to chemical biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823803.1 True 2191 mRNA 0.49 11 6282748 6295167

Neighbor

gene id symbol gene type direction distance location
cbx6b LOC103371236,LOC102794254,LOC102311669 coding upstream 21066 6251370 ~ 6261682 (+)
pvalb6 LOC107087166,LOC104944083,LOC103371237,LOC105933549,LOC103147389,LOC100701083 coding upstream 54662 6182392 ~ 6228086 (+)
pdgfbb NA coding upstream 134619 6134660 ~ 6148129 (+)
tmem150b NA coding upstream 182521 6095139 ~ 6100227 (+)
adsl adsl coding upstream 189022 6082777 ~ 6093726 (+)
sp100.1 NA coding downstream 1490 6296657 ~ 6309954 (+)
LOC120574777 NA coding downstream 17601 6312768 ~ 6321289 (+)
zmp:0000001062 NA coding downstream 33127 6328294 ~ 6332510 (+)
LOC120574282 NA coding downstream 38345 6333512 ~ 6341703 (+)
LOC120574286 NA coding downstream 56455 6351622 ~ 6388364 (+)
G152415 NA non-coding upstream 133165 6149265 ~ 6149583 (+)
G152387 NA non-coding upstream 188533 6093919 ~ 6094215 (+)
G152350 NA non-coding upstream 265277 6017217 ~ 6017471 (+)
G152336 LOC102224681,LOC103147375,LOC103393291,LOC107583318,LOC105890774,LOC107672151,LOC107695138,LOC107748796 non-coding upstream 280106 6000129 ~ 6002642 (+)
G152201 NA non-coding upstream 408445 5873764 ~ 5874303 (+)
G152483 NA non-coding downstream 63902 6359069 ~ 6359290 (+)
G152485 NA non-coding downstream 77068 6372235 ~ 6372529 (+)
G152486 NA non-coding downstream 78162 6373329 ~ 6373554 (+)
G152480 NA non-coding downstream 94609 6389776 ~ 6390296 (+)
LOC120574684 NA non-coding downstream 107153 6402320 ~ 6410964 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 325431 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 510881 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 635558 5626207 ~ 5647190 (+)
G152125 NA other upstream 732202 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 818445 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 974961 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 1044818 7339985 ~ 7356838 (+)
G152892 NA other downstream 1832098 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 2150253 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 2371303 8666470 ~ 8684765 (+)

Expression


Co-expression Network