cbx6b (LOC103371236,LOC102794254,LOC102311669)


Basic Information

Item Value
gene id cbx6b
gene name LOC103371236,LOC102794254,LOC102311669
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6251370 ~ 6261682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824610.1
atCGCTGACGTCGCCACCCTGAAGTTCATTGTTATTATCTTGGCCGCCGGGATGGTGGCCTTCATCGGAGCGGTTATCTGCATCATCGCAGCCGTTCACACCGGGTCCTCCAGGGCTGCCTCGGCACCACAGCAACCAGCAACCGACAACCACTCGCTGTATCCGGGCGCGGATACTGCGGCCGGCTCCGTGGCCCGGGCCGGATCTTTGGGCGCTCTCCATGGTTCTGAAACACCCGATTCAGAAGCACCGACCTTCAACATCGGGCTCAGCGGGCTGGACGGTGTCACCGGACTCACCGGGCATGACCCAACGGTCAGTCGACTCATCTGCACGCCGATCCCCGCCGGGGAATGCAATACGAAAAACTTTCAGCAACAAGCAGAAGACCCGTCGCTGTACGCGGGGGAAGACTGGGGCTACCTCCGCACCACCGCGGAGGAGCTCCGGCAGACCGTCCTGCAACAAAAGGACCAGATACTGACCGACCAGCGGACCATCAGGGACCTGACGGGGAAACTATCCGAGTGTGAGAAGGGGCTGgacggcggcagcagcagcgcgGACAGACGCGGGAGCGCTGCGGGGTTGTGGGGGGCCAAAGGCTCGGCAGAGGAGACGCACATGGAGCGGATCATGGTGCGGGACAGCCCGGGCTCGACGCCCGAAAATGTCCACTTGCTCACCGTTAGGGCAGTGGATGAACTGGAGCAGGCAATCACTCAGCTCAAAGACCGCATAGAGAAACTGGAGTCAGACATTGGCCCATTTCCTCACAACCAGACGGACAGCAACACCTCAGGAGCGCCAGAGGAAGGCGGGATGTCTGGCGGTCCGGAAAGGTTGGCCGATCCCGGGAACAAAGCTGGTGCTGACAGGCCCTGGAGGATGGAAGACTTGGAGGGGGAGCTGGAGAGGAAGGTGGAGCtgctggagaaagagagaaaaacccTGAGGCTGGAAACAGAGAAGCACAGGCAAGGAATCGACCGGGGCATCAATAAGCTACATCACCGAATCTCAGGACTGGAGGAAGGTGTCTCAGGACATTCCTTCCCAGAGGGCTACCGGTTGTCTTTCCCAACTCGGACAAACTACATGTACGCTGTTATGAAAGCCTCCATCCCAGCGCTGCGGGCCTTCACCGCCTGCCTGTGGCTGCGGCCCGCAGAGGGAGGAATCGGGACACCTCTGTCTTACGCTGTTCCCGAGCAACCCAACGAACTGGTGCTGCTGCAAGGCCTGCATACCCCCACTGAGCTGCTCATCAATGACAAGGTGGCGCAGTTGCCTCTAAACCTCTCCCGAGGCAGCTGGCAGCACATCTGTGTGAGCTGGAGCCAGAAGGGAGGAGCTTGGCAGGCCTACCAGGGGGGAAAGCTGAGGGGCGAGGGTCACGCGCTGGCAGCCGGACATCACATCAGACCTGGAGGAGTGCTCATACTGGGGCAGGAGCAGGATTCCCTTGGTGGAGGTTTTGATTCATCCCAGGCCCTGGTTGGAGAGCTGTCCCAGGTGGGTCTTTGGGACCGGGTCCTGTCTTCCAACCAGGTCGCCAGCTTGGCCCGCTGTGGCAGAGTAAGCCAGGGCAGTGTGGCCCCCTGGACCGAGAACGGAGTTGAGGTTTACGGTGGAGCAACCAAGGACCCGGGGGAGCCTTGTAGTAAACACAACAGGAATTCTCGATGACCGGTGGGGGAAGGGGAAGTGAGAGAGAGCAGGGCAAAGGGAGGGGTAAAGTTCTAGCCCTTTCAAGAAGGTAGGATTCTGCCCATCATTAATACCGTTAAAGGGTTTTCTAAACAACTCTACGTGACATGGACTGacaagtatgtaaaaaaaatggaaaattaatGGTAATGTTATATATCTATATGAGATGAGTCAAGGCTTTGCAGTTACTTCACCACACTTTGCAATACAAGATGATATTCCCCATAAATATAGCTGTAGTATGGGCTCACATCATATTTTGTAAATGACTTATAAGTAAATTTATATAGCCTATGTATCCAAATAAAGTAAATTTGATTCAGGCCGCACTAAACTGTCATTGGTCCTAGCTCCTCTGTGCTTTGTTAGCAAACCAGCTAGCAGTCAAACTAGTGAAAGCAACTAAGGTAAATGGTAATATGTGAATTCTAGCAAACAATTGAACCTCCTGCTAGCTAATTAGCAGGCAAATGTGttagatcaataccactctcatgtctgcacagtaaatatgaagctaccatCAGCAGCCAGCTAACTTAACTTAGCGTAAAACTAAAAACatgggggaaacagctagcatgACTCTGTCCAAAGTTAACAAAATCCGCCAAGTAACACCTTACACTCGTAATGAACTAATTTACACATGGCTTGTCTAATccgcacaaaaaaataattcttgtttttacacttgtttttttatggattaaacaaacaagatataataaTAGATATAGTATATCTATTATTATATCTTGCTGAAAGGATTTCTTTCATGAGCTTTAGGGGGGGCTGGTAGGCAAAATGTGTTCTCTTTGGACAAAGCTAGGCTAGCTTTTTCCACCTGTgaccagtctttatgctaagctaaattaGCCAGCTGCTGATCGTACCTGTAGCTTCATACTTAGCGTACATTATGCAAGTGTCAATCTTCTTGTCAAATTCTCAGCAACAAAGCGAACAAGTGTATttgccaaaatgttgaacttgaTGACCACAGCCTATTTCTTCTGTTGAGACAGCCGAGCTGGGAGAAATGAATTGAGTTGTTCACAGCTGCTGTAGCCCTGACCTCCACTACGGCTGCTAGAAGTCGTGTAAAGCCAGCTGAAATCCCTCCACGAGTGCAGCAGGGTGGAGTTATTTCTGTGATTAGGTCTGCGACAGCTTTAGAGTCGGGAGTCAAGGTAAGGTGATGAAAAGTCTTGGACAATGCTGGGGGAATGTTAAATAGTAGATGGCAGCAAGGGGTAGATGATGAAAGAATAAGCAAAGAGGGAGGacacggtaaaaaaaaaatagatagatTGGGCACTTTTAAGGAGTGATGCTACATTGTTTTCACCTCTGCATGATGTATTCATATACCTGTAATGTCTTGCCACTGCGCTGCACTGTGCAGGTCACACGCTGCCTCCTGCATCCACTGCTGGTATAGGTggctgtctttgtgtttgtctaTAAGGCCTGAGGGTCTCTAATGAAATACTGAACAAATCCAAAACAAGGAGTCTTATTCCCATAAGGAAATCACCACCAAAAGCAGAATCTTACTCTTTGGGGCCATTTTACACcttttttaaaaagcctttgCCCCATTTATGTCATTCTGTGCAAATTTAGAAAGTCAAAGTATGTGCTCTGATCAAGGAAATGTGTCTCAGATGATATCTTTTGGCTTCATCGTGTAGTACATACACGTTATGTTCTTTAAATTCATGCAACCTTCAAACACACATAACATTTGTTAttttcaaatttaaataatgCACTCAGTCATTTTTACATTCTTAGATATTGACTGTTTCTTCTTTGCAATTTTATACATGCAACCACTCAATAGTGTGGTTTGATTATTGAACAACCTGCAACCTCCAACTCTTCCAACCTTCCTACATTCCATGCATGAGTCGTACTGTATGTTTGTTACACGCGTCAGTGCATCCGCTACATGTTTCTGAAGATCCATCTCTGATCATGTTTGTActccaaaaacattttaatgattatttCCTACTGTTTGTGTGATACGTGATGTTAAACACAGATTGTTCATTTCAGTCTTTTCTGAAACACTGGCTCTCcctaacataaaaatataatccTTAGTGGAAAGTGCCTGTCAGGGTGTTTGTACCCATGTAGACAAAATCATCTAATTTCTTATCCTGATGGAAAAAATTAACACTGCGAGATATTTTGAACTAATCAAGCATCAGTGTTTCAGGGAATTCCCTGGTggatttttttaagattcaagaggtttgattaaaaacatttgaaactACAGTGCCGCCAAACGGATGCACAATCGGGTCAAAATCATCTTGCCATGTCTAATAGTGTCTTTGATGATGCCCTTTCAGTCTGCAGCGTTATTAACAATATTATGCCTGTCTGTTCAGCTCATGTTAGagcttttttggggggcttttggATAGTGTTGTGGCATTATTCTGTTTACATTTACTGgaattaaaggcttttaaactcCATTGGCAATGTTTCCTTACATGACAattcagatctttttttttttcactgtatgCATTGGTATCTGTCTATTTTCATGTTGTTGTTTGTATAAATAGTGTATGTCCATGTCTTGTAAGGTGTTGTATTGTTCTGCATATGTGCCCTGTCCAAACCTTAAGTCTTTATTAAAGTCCTAATTTTCAGATGTAAA

Function

NR:

description
PREDICTED: neuronal pentraxin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824610.1 True 4405 mRNA 0.47 5 6251370 6261682

Neighbor

gene id symbol gene type direction distance location
pvalb6 LOC107087166,LOC104944083,LOC103371237,LOC105933549,LOC103147389,LOC100701083 coding upstream 23284 6182392 ~ 6228086 (+)
pdgfbb NA coding upstream 103241 6134660 ~ 6148129 (+)
tmem150b NA coding upstream 151143 6095139 ~ 6100227 (+)
adsl adsl coding upstream 157644 6082777 ~ 6093726 (+)
atf4b NA coding upstream 179438 6068936 ~ 6071932 (+)
LOC120573897 LOC100708249 coding downstream 21066 6282748 ~ 6295167 (+)
sp100.1 NA coding downstream 34975 6296657 ~ 6309954 (+)
LOC120574777 NA coding downstream 51086 6312768 ~ 6321289 (+)
zmp:0000001062 NA coding downstream 66612 6328294 ~ 6332510 (+)
LOC120574282 NA coding downstream 71830 6333512 ~ 6341703 (+)
G152415 NA non-coding upstream 101787 6149265 ~ 6149583 (+)
G152387 NA non-coding upstream 157155 6093919 ~ 6094215 (+)
G152350 NA non-coding upstream 233899 6017217 ~ 6017471 (+)
G152336 LOC102224681,LOC103147375,LOC103393291,LOC107583318,LOC105890774,LOC107672151,LOC107695138,LOC107748796 non-coding upstream 248728 6000129 ~ 6002642 (+)
G152201 NA non-coding upstream 377067 5873764 ~ 5874303 (+)
G152483 NA non-coding downstream 97387 6359069 ~ 6359290 (+)
G152485 NA non-coding downstream 110553 6372235 ~ 6372529 (+)
G152486 NA non-coding downstream 111647 6373329 ~ 6373554 (+)
G152480 NA non-coding downstream 128094 6389776 ~ 6390296 (+)
LOC120574684 NA non-coding downstream 140638 6402320 ~ 6410964 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 294053 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 479503 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 604180 5626207 ~ 5647190 (+)
G152125 NA other upstream 700824 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 787067 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 1008446 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 1078303 7339985 ~ 7356838 (+)
G152892 NA other downstream 1865583 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 2183738 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 2404788 8666470 ~ 8684765 (+)

Expression


Co-expression Network