pdgfbb


Basic Information

Item Value
gene id pdgfbb
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6134660 ~ 6148129 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825742.1
CAGAGGAAATATTGCTCAGAGTGGCTGGTTTACGGGCGGTCGTTTGTGGACTAATGTCGCTTCTTAATACGCAGATTATCACCCATTCTTCAGGCAGGGGGCGGGAGAGAGactcttcaccaccaccaccgccgCTGCGTAATCAGGCAGGTCCAGGGCTGAGGCGCACCGAGCCACACAGCGCTTTGCTTATTGATAAGACTCCTTGGAAGAAGAGGACCGCAAACTACCGTGCTGACCTGCGacgtttttgttttcctgcagACGTTCAGCCTGTGAGCTGGACTTTCGGGACGCATCACGGTTAAAGAGACGCTACTGGGAAGAGAGAAGTGAATTGgatatattatgtattttttgaaGAAACATCCTTGGAACTTCGCCTGTCTTTCTGAGTGTCCTGAATAGTTTAGTCTTGTGAAGTTTGTCACTTGCCGTTAGGTCTTCTGCTAATTCAATGTAGGCTATTGCGCTTTTAGACGAAAACGCACACTTGTGCGCAAGTTGAACTAAACAGATAAGACTGAACAACACGTTGAAGAAACTCCTGAATTGAAAACTTGGAGGTTTATAATTCACCCAGAACGGTggagcttcttctttttctatattttcgtcttctattattattattattttttatttttttttacaaggggGGACTTAAACGTTGCGAACACGAgcgcttttcttcttcttcttcttctttggatATCTCGACCGGAGAGACAACAGTGTGGACAGACCGTCTACGCGCGCGCAGTTCCTCAGGGCGAGCCGCTGTCCCCCCCCGCGCGCAGTGCTGAGGAGAGAGGGACTCTCGCGCTTCCATAAATGCCCGGTCCATCGAAGAGGCTCGAGGCTGGGCAGCAAGATGAGCTCGTGGGTCCAGCTGCTGCTCGCGTTGCTGGCGGCGTGTCTGCAGTGTGGCGTAGCCGAGGGGGAGCCTCTGCCTGCAGCCCTGGTGGAGCTGGTTAGAAACAGCCCCATCTCCTCCATAGAGGAccttcagctgctgctgctcactGACTCCGTAGATGAGGAGGACGGGATTTCTGCAGCAAATGGAGGCCATAGACTACCAAGGAGCCTCGATGCCCAGCCAGCTCAGCAGGCTCTGTGTAAAGTTCGTACAGAGGTGGTTGAGGTCACCAGGGCGATGTTGGACCGTAGCAACGCTAACTTCCTGTTATGGCCGCCCTGTGTCGAGGTGCAGCGCTGCTCTGGCTGCTGCAACACCAAGAGCCTGCAGTGCGTCCCTGTCGTCACGCACACCAGATACTTGCAGGTCATGAAGATCGAGTACATCAACAAAAGACCCACTTACGCTAAAGCTGTGGTGTCAGTGGTTGATCATGTGGAGTGCCGATGTCAGCCTGCTCCACGTCCCTCTGTGCCCAAGAAAAAATCATCTCGCAGACAGCATAACCACCAGCACCGAAACCAGACACTCAGCCAAGGACATGGAcaggtCAAGGTGCACTCCAAGGATGAACTCCATCAGTGGGATGAGCTGAAGCAGAACCAGAGGGCCCACCTGGAGGACCTCCTGGAGCATCACTGGAGCCCCAGAGGAGACACCTTCACTCAGCCTGGAGAAGGATACAGCCTGGTTAGGGAAGAAACATCTCGCACTGGAGAGGCTATTCCTTTTGCTCCACACTGGGCACATAACTCCACCAGGCTCCTTGGGACTAAAGACCAAACTGAGATTCAGGAGAACATTTCCTCAGTGGACAATCTTGGTGCTGAGGGAAAGAACCAGTTGGTAGAAGGTGGGGAGTTGTTGCTGCTCAACAACACTGAAGGGGAAGTTAACGAGGGAAACGAGAGCAGGGATGAAGGCACGCAAACGTACAGTCCATTTTGGCAAGAAGACAGATCCAAACTTTCAAAGAGCCACACGAGTGGTTCCTCACACCCTGTCACTCCAAATTTTCAAGCCAAGCTCAGTCCTACTGAGGCGCCCGGTGAGAGAGTTGGGAGCAGGTTCCGACCGACCAAAGAGCCAAATCCAGAGCCTCGAGAACAGGCGAGACGAAGAGACAATGAGACTCCCAAGGTGGTGAGGATATTACAGATCGAGGAGGAAAAACTGgagcaggagagaaaagagCTTCTACTTCTCCACAAGAGGCTGGACCAAGAGAAGGAGATCCTGAGACAGCAGCAGATGAAACGTGAAGCGgaggaaagggagaaagaaaaggaaacggATAGACATCACCTGCATGgtaaacatcatcatcatctgcaaACAActacaacacagaaaacagCGACAACATCTACAACAACTACACAGCAGCCATCAGCTCCAGCAGGCCCCAGACCCCCAGCCCGTCCAAAGAAAAGGATGAGGAAGAATCGCAAACGAATCAGCAAGGCAGCTATGAGAGCAATGCTAATGTAAAGCTAAAATAAAGCCAGGGACACAAAGTGAACATGGTGTATTTCTTGGATCCAGAGGTGAAGCAGAGTGACTCCCTTCATATAAGTATTTATTCACGTGTCAGTAACCTGCTCGTCCTGTGAGATCTCCTCCGTAACACTACTAATGACTGTCTGGTGAACCTGTAACTACACCTGTGTGGAGTAAGAGGAGGGCAAGAAGAAAATgggatataaataaaaaaagggggaCCTGGTCAAGAAAATGCTTGGCTCTGCAACAACAGTTGCTGGTATGAAGTCACAATTTTCACCCGGAAACTGACAAATTGTGTGCGAGCACAGAACCTGTGGGGGATGTGAAACTGCATCGCTGTAAAACTGTGGACAATGGTGCAATTTCGAAACTCTTTTTGAAACCTTGCTTTGATATCAACAGAGAGAAACTGCACTTATACGTATGTTGACAGAACCGAGTCTACATGGGGTTTAAATGACGTTTGTTGCTGAAAGACTTTTGTGGTAACAACGATGAGACGGACGATTTGGTGGAAAAATGGACATAACAATTTCGTTTCATTGAAGAATCTGTTGTATTGTAATTGGATAATCTTAGAGACAATCATCGATAGACTGCAACAACAAAGGATGTTGACTAAAATGAGCAGTATATTTCCACGTGTGATAAAATTCATACTGAGGGCTCAGTGTTGGGAAGATAAAGCTGTGTAGATTTACCCTACTAAGGCCTGATATCATTTATTAGCTCTGTAAAAACAGTGATGGTCTCTCTTTAACCATATTAAATTGTATTTAACTCCTTGCAAACACTGGAATTACACAGATGTGATTGGAGggcaaaaacatgaaaatgttgCATTTCAAAATCTCATTGTAGGTGTGAAGAAAAAGGTGCTATCTGAACACGAGGTGATAGCGTTACACCTGCGACCTGACGTTGTGCTATTTTTCCTATTTATTTATCTCTGCCATTACTGTGGATTAACTTTTTATACGAATACTGCATACAAGATGTGGTTGAGATACGTAACAGTGCTTTGTGATGGCTGGGTGGttcaaacagaaagaaagacagaataaaacaaaaaaagataaaaacctTTGATGTCCTCCCAGGATCATGCAGTGTTAAACTTCTAtgtaaaaaatatgtaaaaaaaacaactgtgtgtttgttttgtatgcCTAAGTGTGTGGTGTAGTGTGTGCAATGGATTGTGCCTACAACTACTGTACACTTCTGTCATGCATCTCAATACCCATGTAGAAGCATGTATCTGTTTCTCTCATTGATAAAGACATGTCTCTCTTCCGCTGAAA
>XM_039825743.1
CCTCTGCCTGCAGCCCTGGTGGAGCTGGTTAGAAACAGCCCCATCTCCTCCATAGAGGAccttcagctgctgctgctcactGACTCCATGAGGAGGACGGGATTTCTGCAGCAAATGGAGGCCATAGACTACCAAGGAGCCTCGATGCCCAGCCAGCTCAGCAGGCTCTGTGTAAAGTTCGTACAGAGGTGGTTGAGGTCACCAGGGCGATGTTGGACCGTAGCAACGCTAACTTCCTGTTATGGCCGCCCTGTGTCGAGGTGCAGCGCTGCTCTGGCTGCTGCAACACCAAGAGCCTGCAGTGCGTCCCTGTCGTCACGCACACCAGATACTTGCAGGTCATGAAGATCGAGTACATCAACAAAAGACCCACTTACGCTAAAGCTGTGGTGTCAGTGGTTGATCATGTGGAGTGCCGATGTCAGCCTGCTCCACGTCCCTCTGTGCCCAAGAAAAAATCATCTCGCAGACAGCATAACCACCAGCACCGAAACCAGACACTCAGCCAAGGACATGGAcaggtCAAGGTGCACTCCAAGGATGAACTCCATCAGTGGGATGAGCTGAAGCAGAACCAGAGGGCCCACCTGGAGGACCTCCTGGAGCATCACTGGAGCCCCAGAGGAGACACCTTCACTCAGCCTGGAGAAGGATACAGCCTGGTTAGGGAAGAAACATCTCGCACTGGAGAGGCTATTCCTTTTGCTCCACACTGGGCACATAACTCCACCAGGCTCCTTGGGACTAAAGACCAAACTGAGATTCAGGAGAACATTTCCTCAGTGGACAATCTTGGTGCTGAGGGAAAGAACCAGTTGGTAGAAGGTGGGGAGTTGTTGCTGCTCAACAACACTGAAGGGGAAGTTAACGAGGGAAACGAGAGCAGGGATGAAGGCACGCAAACGTACAGTCCATTTTGGCAAGAAGACAGATCCAAACTTTCAAAGAGCCACACGAGTGGTTCCTCACACCCTGTCACTCCAAATTTTCAAGCCAAGCTCAGTCCTACTGAGGCGCCCGGTGAGAGAGTTGGGAGCAGGTTCCGACCGACCAAAGAGCCAAATCCAGAGCCTCGAGAACAGGCGAGACGAAGAGACAATGAGACTCCCAAGGTGGTGAGGATATTACAGATCGAGGAGGAAAAACTGgagcaggagagaaaagagCTTCTACTTCTCCACAAGAGGCTGGACCAAGAGAAGGAGATCCTGAGACAGCAGCAGATGAAACGTGAAGCGgaggaaagggagaaagaaaaggaaacggATAGACATCACCTGCATGgtaaacatcatcatcatctgcaaACAActacaacacagaaaacagCGACAACATCTACAACAACTACACAGCAGCCATCAGCTCCAGCAGGCCCCAGACCCCCAGCCCGTCCAAAGAAAAGGATGAGGAAGAATCGCAAACGAATCAGCAAGGCAGCTATGAGAGCAATGCTAATGTAAAGCTAAAATAAAGCCAGGGACACAAAGTGAACATGGTGTATTTCTTGGATCCAGAGGTGAAGCAGAGTGACTCCCTTCATATAAGTATTTATTCACGTGTCAGTAACCTGCTCGTCCTGTGAGATCTCCTCCGTAACACTACTAATGACTGTCTGGTGAACCTGTAACTACACCTGTGTGGAGTAAGAGGAGGGCAAGAAGAAAATgggatataaataaaaaaagggggaCCTGGTCAAGAAAATGCTTGGCTCTGCAACAACAGTTGCTGGTATGAAGTCACAATTTTCACCCGGAAACTGACAAATTGTGTGCGAGCACAGAACCTGTGGGGGATGTGAAACTGCATCGCTGTAAAACTGTGGACAATGGTGCAATTTCGAAACTCTTTTTGAAACCTTGCTTTGATATCAACAGAGAGAAACTGCACTTATACGTATGTTGACAGAACCGAGTCTACATGGGGTTTAAATGACGTTTGTTGCTGAAAGACTTTTGTGGTAACAACGATGAGACGGACGATTTGGTGGAAAAATGGACATAACAATTTCGTTTCATTGAAGAATCTGTTGTATTGTAATTGGATAATCTTAGAGACAATCATCGATAGACTGCAACAACAAAGGATGTTGACTAAAATGAGCAGTATATTTCCACGTGTGATAAAATTCATACTGAGGGCTCAGTGTTGGGAAGATAAAGCTGTGTAGATTTACCCTACTAAGGCCTGATATCATTTATTAGCTCTGTAAAAACAGTGATGGTCTCTCTTTAACCATATTAAATTGTATTTAACTCCTTGCAAACACTGGAATTACACAGATGTGATTGGAGggcaaaaacatgaaaatgttgCATTTCAAAATCTCATTGTAGGTGTGAAGAAAAAGGTGCTATCTGAACACGAGGTGATAGCGTTACACCTGCGACCTGACGTTGTGCTATTTTTCCTATTTATTTATCTCTGCCATTACTGTGGATTAACTTTTTATACGAATACTGCATACAAGATGTGGTTGAGATACGTAACAGTGCTTTGTGATGGCTGGGTGGttcaaacagaaagaaagacagaataaaacaaaaaaagataaaaacctTTGATGTCCTCCCAGGATCATGCAGTGTTAAACTTCTAtgtaaaaaatatgtaaaaaaaacaactgtgtgtttgttttgtatgcCTAAGTGTGTGGTGTAGTGTGTGCAATGGATTGTGCCTACAACTACTGTACACTTCTGTCATGCATCTCAATACCCATGTAGAAGCATGTATCTGTTTCTCTCATTGATAAAGACATGTCTCTCTTCCGCTGAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107710051

GO: NA

KEGG:

id description
K17386 PDGFB; platelet-derived growth factor subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825742.1 True 3732 mRNA 0.47 8 6134660 6148129
XM_039825743.1 False 2782 mRNA 0.46 7 6141278 6148129

Neighbor

gene id symbol gene type direction distance location
tmem150b NA coding upstream 34433 6095139 ~ 6100227 (+)
adsl adsl coding upstream 40934 6082777 ~ 6093726 (+)
atf4b NA coding upstream 62728 6068936 ~ 6071932 (+)
LOC120575492 NA coding upstream 65914 6055758 ~ 6068746 (+)
mief1 mief1,LOC102791538 coding upstream 93009 6037258 ~ 6041651 (+)
pvalb6 LOC107087166,LOC104944083,LOC103371237,LOC105933549,LOC103147389,LOC100701083 coding downstream 34263 6182392 ~ 6228086 (+)
cbx6b LOC103371236,LOC102794254,LOC102311669 coding downstream 103241 6251370 ~ 6261682 (+)
LOC120573897 LOC100708249 coding downstream 134619 6282748 ~ 6295167 (+)
sp100.1 NA coding downstream 148528 6296657 ~ 6309954 (+)
LOC120574777 NA coding downstream 164639 6312768 ~ 6321289 (+)
G152387 NA non-coding upstream 40445 6093919 ~ 6094215 (+)
G152350 NA non-coding upstream 117189 6017217 ~ 6017471 (+)
G152336 LOC102224681,LOC103147375,LOC103393291,LOC107583318,LOC105890774,LOC107672151,LOC107695138,LOC107748796 non-coding upstream 132018 6000129 ~ 6002642 (+)
G152201 NA non-coding upstream 260357 5873764 ~ 5874303 (+)
G152179 smurf1 non-coding upstream 303997 5794124 ~ 5830663 (+)
G152415 NA non-coding downstream 1136 6149265 ~ 6149583 (+)
G152483 NA non-coding downstream 210940 6359069 ~ 6359290 (+)
G152485 NA non-coding downstream 224106 6372235 ~ 6372529 (+)
G152486 NA non-coding downstream 225200 6373329 ~ 6373554 (+)
G152480 NA non-coding downstream 241647 6389776 ~ 6390296 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 177343 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 362793 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 487470 5626207 ~ 5647190 (+)
G152125 NA other upstream 584114 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 670357 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 1121999 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 1191856 7339985 ~ 7356838 (+)
G152892 NA other downstream 1979136 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 2297291 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 2518341 8666470 ~ 8684765 (+)

Expression


Co-expression Network