LOC120544449 (dcx)


Basic Information

Item Value
gene id LOC120544449
gene name dcx
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 22529086 ~ 22556944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778195.1
TTTAGGACCCAGTGGCTCCTCCAGTGAGGCAGGCAGCGGCTCGGCTCTCAGACTGAAGCAGACAAAGGCGAGGGGAGAGACGGCGTGCCGCTATCCTGCTGCATCGACTCCCACATCCACGCAcgctcccccccccacacacactcccttCTCTTCGCAAGCAGCGACGCAGACTCTCCGGAGCTGGTCATCACCACCACACATCTGTCAAAACCATCTCAACTTTCAGTCATCATGGAGCTAGACTTTGGACATTTTGATGAGCGAGACAAGGCATCCCGTAACCCGCGGGGCGGGCGCCTGAATGGACTTCCCAGCCCTACCCACAGCGCCCACTGCAGCTTCTACCGCACGCGCACTCTGCAGGCCCTCACCAATGAGAAGAAAGCCAAAAAGGTGCGCTTCTACCGCAACGGAGACCGCTACTTCAAGGGCATCGTGTACGCTGTGGCCAACGACCGATTCCGCACCTTTGACTCATTGCTGGCTGACCTCACACGCTCGCTCTCTGACCACATCAACTTGCCACAAGGTGTCCGCTTCATCTTCACTATTGATGGCACACGCAAGATCGTCTCAATGGATGAGCTAGAGGAAGGGGAAAGCTATGTTTGTGCATCAGAGAACATCTACAAGAAGGTTGACTACACAAAGAACGTCAACCCTAACTGGTCCGTGAATGTAAAGGCCTCAGCGAGCCAGAAGAACATGCAAGCCTTTGTTGCCAAAGCTGCCGGAGGAGAGAGCAAGGACTTTATTCGACCCAAGCTAGTGACGGTGATGCGCAGCGGTGTGAAGCCACGAAAGGCTGTGCGCGTCCTGCTCAATAAGAAAACGGCACACTCCTTCGAGCAGGTGCTCACCGACATCACAGAGGCCATTAAACTCGAAAGCGGCGCGGTCAAGAGGATCTACACACTTGACGGAAAGCAGGTTACCTGCCTTCAAGATTTCTTTGGCGATGACGATGTCTTCATTGCATGTGGACCAGAGAAATTCCGCTACGCCCAGGACGACTTCTCTCTGGATGAGAACGAATGCAGGGTGATGAAGGGAGCCAAAGCTCAACGTGGTTCAGTTAAGAGTCCTGGTCCGATCAGGCGCATCAAGTCTCCTGCTGAATCGACCAACGGGACGGGCTCCAGCAGCCAGCTCTCCACCCCAATTTCCAAGCATTCCCCAACCTCCACCCCCAACAGTCCAGGCCTCAACAACAAGCAGAAGGATCTCTACTTGCCCTTATCTCTGGATGATGATGACTCTCTCGGTGAATCAATGTAGACGCTCCTCCTGCAGCCTGCCTCCTTTTTGGCCTGAAACACAGAAGTTTTTATACATCTGCTGCTTTCCACCTTCACTCACAGTGCCACCTGTTCTGTAGGAGaacctttctttttctctttttaaggCCTTAGCCATCAGGGCTATGACACCATTTGCTGCTTGAGAATAACACAaacctttttgttttgcttttaaatCGGTTTTGACCACGTTGTAACAATCAGCTCACTAATGTTCAGACGTATGTTTCTATGTGGAGGTTAACCACTATTTCTCAAAAAGGGCACACAGTTCACGGACCAGCAGATTTCACGGTGTAAAAATGTCACTTCGGTCTCAAACCTTTTGTTGAAGGATGTACTCTGGCTTTTAATATTTCGGTCACAGAATTCCAAGCAGCAAATGGAATTTTTTAGGGGTGTTAGTCAGAActaacttttttatcacttgtaTTTGTGACGTTCCTCCATGTCCTCCATGTCCTACGGTTAAAGGTGTGAAAGGTAATGGTCCCTTGTTAGAGGAAATCTGCTACGCCAGACAGTCTTTTTAACCCGTTGTAAATACTGTGTATAGCTATCCATCATAACATCTCTGCCCAGTGTTCATTGCTGTGCTTCTATAACGTCACTACATATGTCCGTCTAACATTTGCTCAACATGATACAGGGTATGGTCAAAGTAAAAGAAGAGCCAACAAAATGAAGTCCCACCGCAGAGGGTGAGGATGTGTGGGATGCAGCTCCCAACTGAAGAGGATTATCAGAAGCCAACGCCTCCTCAATGAGAATTCATGTTCCCAAATGAACAAGAGATTATAAAACCATAAGATGACACTTTTTACTAAACCACCATAACAACGGAGGCCTCAGAATCCTTATGTTGGCAATAATTGGCATTCATCTTGTCTAATCAAGGACGAGGAAATAACTATGAAAACGCATCCCACATAGCCCTCAGAAGTCTTTGTGTTGGGGTTTCCTTTATTTAGACCCTCTACGTAGACAGTAGGCAATATATACCCTCTGTGTTTTAGATTTTCACAAACTGCAGTGCATGTTATTGCTGAATGATTATGAAACTGGGCATCAAAAAACCTGATTTGAAGGACCTAATGGTGCATAAAAACAaccaaaggaaaaaaatattaggccctttttaaaaaagaaaaaaaaaagaagagaaaaaaaaagaaaagccaacACACATTCAGTATACAGTCTAAATAATTCCCTTTTAGGCCAGGTTGTCACTTGTGACATTTTATAGTACAAAGTGTGAAATTCAAAGACCAATAAATAAAAGGTATCAAAGCCAAAGTAGGATGTTTGAAGTACGATGATGATTTTTAGACCAATAACTATAAGGGAAAATACGTAACTTTATTAGTTGTAAAATGCTTTTAAATATCCTGGAGGAAGCACACCTGAAGATTTCTGCATGTTACttttaacacaaaaaataacGTCCGAGGCATTTGAGGCAATTCAAGTTTTATCAGGTTAAACTGTAGTGGAGTTTCTCCTTTTGCATGGCTCAGCGTAGTTCTCAGATACAGGGGAGATGAAAACGTAACGGTTGTCTAAATCTATATGTgggttttaaatttttataaagttttattaatttatatcAAGGGTACTAGAATTTCTTTGCATTTGTTGACATGAGCTCTTAACACTAGTACTTTTTTCAAGCCTCTGTGTGCAACTTTCTATGGCCATATTTCTTTTTCTATCGTCACAACTTGCATTGTGTATCTTACAAATCTACTGGACAGAGTTTTCTCAGACCTTTGCAGGGAATCAAGCCTGAGAATCGCTAAATTGGATGACACTGAAGCACAAAGCAGGGAGCTACTTATTTATCTCAGCAACAGACACTTTACAGTTTGCTTGCCAGCAGTACAATGCGTGACCACAATTCATTTCTCAATATAATGAAAAAATGATGCTGCACATAGTGTAGCATCCTTTAAATTAACATCTATGCATTTGGATTCAAGAATAGTTCAAAATAGTTTTCCTTTTCTCTAGGAATGGCCTTTTTTATATCCAATAGCATTATGAGAAATGAACTAAAACAGAAATTTCCATGCAGTTATTCCATTGTGATGATGTGACAGTCTGAAAGTTGTATGTCTAAGAGTAGGTGCCCGTCCTCTGGATAATCCTTGAATAGCTGTGTACATCTGCCACTTAGTGCTCCCTAAACTATCCGGTGCTGTGAACTCCACCTTTCTCCTGCAGGGAGTGCTGTCACACCAGCACAATAGCTAAGAATATCCGCTAATCCAACAGCAGGGACACCTCACTTCACTTTAACCACCATTTTGTACAAAAATCCCATTTGTAGTCAAAATATCAGTTCTGTATAACCTCACATGCTAATAGTCTCGCTTCCTTGATTTTTCTACAGCGTATTGCAGCGCTACAGCATTATAAAGCATTAACAGAAAATGTTGGTTGTCTTGTGTTAACCTGCCGCCACCATGTAAGATGGGGGGTGTGAATTCATCTCCTACAgtggtgcctttttttttttaagattactgtcttttgataataataaaaaaatccaatGGGACATCGAAAGTTTGATCTTTGTTAACAGCTGTTTGTAAAACCTTTTTAAACATCTTGAATGAGGAGGCCTCCCAACACACTTTGTTTTGTAGAGCTACAGGACACTTTATCATGGTGTAAATACGCTCCCCTCCTGTTCTCTTTCATATGTATGCCTTTCTGATtgaatgaatttttttttttttttcttggaaaTGTACAATgtcctttttagtggtattttGCAATGTCACAGTGGCTTGTTTCAGTGCTTCATTCAATGTATTAACCGGTATCCTTTTGCAATTAAAACAGTTGTATTTCA

Function

symbol description
dcx Enables microtubule binding activity and protein kinase binding activity. Involved in neuron migration. Located in neuron projection. Implicated in X-linked lissencephaly 1 and subcortical band heterotopia. Biomarker of high grade glioma and temporal lobe epilepsy.

NR:

description
neuronal migration protein doublecortin isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K16579 DCX; neuronal migration protein doublecortin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778195.1 True 4173 mRNA 0.43 7 22529086 22556944

Neighbor

gene id symbol gene type direction distance location
LOC120543725 capn6,capn5 coding downstream 5529 22512361 ~ 22523557 (-)
spag7 spag7 coding downstream 76909 22447538 ~ 22452177 (-)
neu3.1 neu3,neu3a,LOC104941831,LOC101487017,LOC102203440 coding downstream 102069 22423974 ~ 22427017 (-)
LOC120544203 gfra3,LOC103353320,LOC102777392 coding downstream 319679 22186719 ~ 22209407 (-)
cdc23 cdc23,LOC102777673 coding downstream 378991 22143765 ~ 22150095 (-)
il13ra2 NA coding upstream 23373 22580317 ~ 22587639 (-)
lrch2 lrch2 coding upstream 37882 22594826 ~ 22629441 (-)
wdr44 wdr44 coding upstream 88141 22645085 ~ 22657563 (-)
LOC120543586 LOC102792026,LOC101478344,LOC102213107,LOC100696094,LOC102309081 coding upstream 290219 22847163 ~ 22870641 (-)
kat5a kat5 coding upstream 360158 22917102 ~ 22926382 (-)
G167697 NA non-coding downstream 146281 22379820 ~ 22382805 (-)
G167696 NA non-coding downstream 149310 22379547 ~ 22379776 (-)
G167695 NA non-coding downstream 149681 22378787 ~ 22379405 (-)
G167694 NA non-coding downstream 150567 22378197 ~ 22378519 (-)
G167693 NA non-coding downstream 151152 22377666 ~ 22377934 (-)
G167786 NA non-coding upstream 86438 22643382 ~ 22731145 (-)
G167801 klhl13,LOC104946894,LOC102794736,LOC106603113 non-coding upstream 134683 22691627 ~ 22699970 (-)
G167816 NA non-coding upstream 202256 22759200 ~ 22760547 (-)
G167903 LOC103353295 non-coding upstream 254645 22811589 ~ 22814577 (-)
G167905 NA non-coding upstream 264527 22821471 ~ 22821727 (-)
mepcea mepce,LOC103353310,LOC101485584 other downstream 60470 22460531 ~ 22468616 (-)
chrdl2 chrdl2,LOC102798861 other downstream 82330 22440311 ~ 22446756 (-)
zbtb20 zbtb20 other downstream 278708 22218060 ~ 22250378 (-)
G167589 prdx4,LOC101470355 other downstream 530438 21996959 ~ 21998648 (-)
LOC120543962 LOC103368266 other downstream 665342 21844697 ~ 21863744 (-)
G167902 NA other upstream 252770 22809714 ~ 22810452 (-)
zmp:0000001168 sipa1 other upstream 322772 22879716 ~ 22912915 (-)
si:ch211-117m20.4 LOC104950135,LOC102215356,LOC102305874,LOC101475389 other upstream 392563 22949507 ~ 22951736 (-)
LOC120543557 NA other upstream 593900 23150844 ~ 23153409 (-)
slc12a9 slc12a9,LOC103370084 other upstream 869844 23426788 ~ 23437928 (-)

Expression


Co-expression Network