foxd1 (foxd1,LOC102786484,LOC102309925)


Basic Information

Item Value
gene id foxd1
gene name foxd1,LOC102786484,LOC102309925
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26235152 ~ 26237093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778829.1
GCCCTTTTGCAGGTTTCCCAGCTCGTTTTCTCAGCCTGGCATCGACGGGACCGTTCGTTAGTCGGCGATAAAaacccttaaaaaaaacatatggaaACAGGGAGAGCAAACAGGGGGACATCTCTCACCAACGGCCACACgtgctcctctcctctccccctcctcgTATGAGTTTTTGAAGAGGGAGGGCAGGGCAGCTTGTGCATCTCATCGTTTCCTCATCTGGCGTCCGAGGGCACGGTCGTGTGTGAGCCATGACTCTGAGCTCAGAGATGTCGGATGCCTCTATCCTCTCGGAGGAGACCGACATTGACGTGGTCGGCGAAGGGGAGGATGGAGACAACCAGACGCGCTCCTACGTGGACGAGGTGGCGCAGATGCACGACGGCATCCTCCTGGACggctcttcttctcctcctccgtGCCTGGACAGCTCCGGCTCCTCGAGGGATAGCTACAAACCCGCGGGCAAGAACAACCTGGTGAAGCCCCCTTACTCCTACATCGCCTTAATCACCATGGCCATCCTGCAGAGTCCCAAAAAGAGGCTCACTCTCAGCGAGATCTGCGACTTCATCAGCAACCGCTTCCCGTACTACAGGGAGAAGTTCCCGGCCTGGCAGAACTCCATCAGACACAACTTGTCTCTCAACGACTGCTTCGTGAAGATCCCGAGGGAGCCCGGGAACCCTGGGAAGGGCAACTACTGGACCTTGGACCCGGAGTCGGCTGATATGTTTGACAACGGGAGCTTTCTGAGGAGGAGGAAGCGCTTCAAGCGGCAGCAGGCGCAGGACTTGCTGAGGGAACACAACACTTTTATCCCCGCAGCTGCTGCGTATGGGTACGGACCGTACGGCTGCGGAGGATACGGCATCCAGCTCCAGTCctaccacacacactctgcacttTTTGcgtttcagcagcagcagcatcagcagcatcagcagcatcagcagcatCAGCACTCCAGGCATTCGCATGCACACACGGGAACCATTATCCCCGCGCCGTCTTTGATGGCAACCAGCACGGACTTAGCCAGGAGCAGGTTTTATCCCCAGCTCGGCTCCAGTCTGGGCTCGGCCAGCGTGCAGGCTGCAGCCCCGGCTCAGAAGTCCAGCTCTCCGGTGCAGCGGTCTCCCTTCTCCATAGAGAGTATTATCGGGGGGTCACTGAGCCCCTCCAGGACTTCTCCCGCCGTTATCCCGGTCTTACCGTCCTCTCTGGGGCCTCCATCGGCCAGCCAGGCGCAGACCGTCCACCCCGGAGCTGTTTTACACCCGGTAGAAAACTTTCCGAACAGAGCTGTCAGCGGCACTAGCGACTGTTAAATGTCTTAACAACAAACTTTtcaagacacaaaaaaaaaaaaaaagaaaaaaaagaaacagcaacaaaaacaaaaaaacgccCCTCTTTTGAAGGTAGgattatttttgtatgtttgtttgataGCACGCAGCTGAATGATGgacataaaaaaacactatttGTGCCTAAATTCATgctgttaaaaatatatatttatgttaatTTTTTTCAGTGTGAATCTGACTTTTGACCACGAACTTTCCTTATATTTCCCATGGAGCAATTCGTTTCAGTCACTGTTTAGGGCGTCTCAGGATAACGAATTAATAGGCAGGTTATAAATGATCACATGTTTTGAAAATAGGCTaataatgtatttgtgtcaaacacatccatgtttttttttttattagtttggcaaatcaaaactttttttatggTTTCGATTTGAACTTTGTATTAAAAACACAGAGCAAAGGCatacatttataataatatgcagtgtgtgtgtgtttatttcagtaataaaacattgtaaatTTTTGGCAAGTATTGTGTAATtgaagtgtgatatttttacacgGTTTGTTTTTCATCAAGAATAAATTTCGTTTTGCAAAAAAGGTAA

Function

symbol description
foxd1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; head; immature eye; and neural crest. Orthologous to human FOXD1 (forkhead box D1).

NR:

description
PREDICTED: forkhead box protein D1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778829.1 True 1942 mRNA 0.49 1 26235152 26237093

Neighbor

gene id symbol gene type direction distance location
ankra2 ankra2 coding upstream 16879 26210937 ~ 26218273 (+)
enc1 enc1,LOC106529253,LOC104945826 coding upstream 191852 26031698 ~ 26043300 (+)
gfm2 gfm2,LOC102784364 coding upstream 230045 25997920 ~ 26005107 (+)
LOC120545449 LOC104943206,LOC100700751,LOC102783804,LOC103374055,LOC102290254,LOC101481254,LOC102208360 coding upstream 241976 25982681 ~ 25993176 (+)
LOC120545450 NA coding upstream 248474 25982670 ~ 25986678 (+)
dck dck,LOC102787471 coding downstream 176007 26413100 ~ 26421846 (+)
LOC120545881 LOC103353282,LOC104952208 coding downstream 185992 26423085 ~ 26464694 (+)
LOC120545806 LOC103353293,LOC100699672 coding downstream 236473 26473566 ~ 26475470 (+)
fbp1b LOC103389985,LOC104953344,LOC103353278 coding downstream 275730 26512823 ~ 26519174 (+)
gas1b LOC103353277,LOC104953345 coding downstream 293131 26530224 ~ 26532355 (+)
G177802 nsa2 non-coding upstream 237454 25995444 ~ 25997698 (+)
G177769 NA non-coding upstream 304868 25928297 ~ 25930284 (+)
G177760 NA non-coding upstream 409163 25825743 ~ 25825989 (+)
LOC120545910 NA non-coding upstream 421917 25812468 ~ 25813235 (+)
G177751 LOC103360605,LOC101079510 non-coding upstream 502148 25729673 ~ 25733004 (+)
G177874 NA non-coding downstream 123301 26360394 ~ 26361272 (+)
G177876 NA non-coding downstream 132748 26369841 ~ 26373688 (+)
G177937 NA non-coding downstream 277433 26514526 ~ 26514962 (+)
LOC120546076 NA non-coding downstream 454288 26691381 ~ 26692888 (+)
G178045 NA non-coding downstream 867685 27104778 ~ 27105030 (+)
G177809 hexb,LOC102784651 other upstream 213321 26018164 ~ 26021831 (+)
G177759 NA other upstream 386030 25829718 ~ 25849122 (+)
G177715 NA other upstream 701463 25533132 ~ 25533689 (+)
zgc:63972 cuta,LOC103373665 other upstream 930120 25245562 ~ 25305032 (+)
G177596 map1b other upstream 1523511 24702971 ~ 24711641 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other downstream 99214 26336307 ~ 26412013 (+)
LOC120546038 NA other downstream 349554 26586647 ~ 26614959 (+)
LOC120545040 LOC103353292 other downstream 490717 26727810 ~ 26930294 (+)
nln nln other downstream 765366 27002459 ~ 27011449 (+)
erbin erbin other downstream 775796 27012889 ~ 27065706 (+)

Expression


Co-expression Network