RNA id: XM_039778829.1


Basic Information

Item Value
RNA id XM_039778829.1
length 1942
RNA type mRNA
GC content 0.49
exon number 1
gene id foxd1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26235152 ~ 26237093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCTTTTGCAGGTTTCCCAGCTCGTTTTCTCAGCCTGGCATCGACGGGACCGTTCGTTAGTCGGCGATAAAaacccttaaaaaaaacatatggaaACAGGGAGAGCAAACAGGGGGACATCTCTCACCAACGGCCACACgtgctcctctcctctccccctcctcgTATGAGTTTTTGAAGAGGGAGGGCAGGGCAGCTTGTGCATCTCATCGTTTCCTCATCTGGCGTCCGAGGGCACGGTCGTGTGTGAGCCATGACTCTGAGCTCAGAGATGTCGGATGCCTCTATCCTCTCGGAGGAGACCGACATTGACGTGGTCGGCGAAGGGGAGGATGGAGACAACCAGACGCGCTCCTACGTGGACGAGGTGGCGCAGATGCACGACGGCATCCTCCTGGACggctcttcttctcctcctccgtGCCTGGACAGCTCCGGCTCCTCGAGGGATAGCTACAAACCCGCGGGCAAGAACAACCTGGTGAAGCCCCCTTACTCCTACATCGCCTTAATCACCATGGCCATCCTGCAGAGTCCCAAAAAGAGGCTCACTCTCAGCGAGATCTGCGACTTCATCAGCAACCGCTTCCCGTACTACAGGGAGAAGTTCCCGGCCTGGCAGAACTCCATCAGACACAACTTGTCTCTCAACGACTGCTTCGTGAAGATCCCGAGGGAGCCCGGGAACCCTGGGAAGGGCAACTACTGGACCTTGGACCCGGAGTCGGCTGATATGTTTGACAACGGGAGCTTTCTGAGGAGGAGGAAGCGCTTCAAGCGGCAGCAGGCGCAGGACTTGCTGAGGGAACACAACACTTTTATCCCCGCAGCTGCTGCGTATGGGTACGGACCGTACGGCTGCGGAGGATACGGCATCCAGCTCCAGTCctaccacacacactctgcacttTTTGcgtttcagcagcagcagcatcagcagcatcagcagcatcagcagcatCAGCACTCCAGGCATTCGCATGCACACACGGGAACCATTATCCCCGCGCCGTCTTTGATGGCAACCAGCACGGACTTAGCCAGGAGCAGGTTTTATCCCCAGCTCGGCTCCAGTCTGGGCTCGGCCAGCGTGCAGGCTGCAGCCCCGGCTCAGAAGTCCAGCTCTCCGGTGCAGCGGTCTCCCTTCTCCATAGAGAGTATTATCGGGGGGTCACTGAGCCCCTCCAGGACTTCTCCCGCCGTTATCCCGGTCTTACCGTCCTCTCTGGGGCCTCCATCGGCCAGCCAGGCGCAGACCGTCCACCCCGGAGCTGTTTTACACCCGGTAGAAAACTTTCCGAACAGAGCTGTCAGCGGCACTAGCGACTGTTAAATGTCTTAACAACAAACTTTtcaagacacaaaaaaaaaaaaaaagaaaaaaaagaaacagcaacaaaaacaaaaaaacgccCCTCTTTTGAAGGTAGgattatttttgtatgtttgtttgataGCACGCAGCTGAATGATGgacataaaaaaacactatttGTGCCTAAATTCATgctgttaaaaatatatatttatgttaatTTTTTTCAGTGTGAATCTGACTTTTGACCACGAACTTTCCTTATATTTCCCATGGAGCAATTCGTTTCAGTCACTGTTTAGGGCGTCTCAGGATAACGAATTAATAGGCAGGTTATAAATGATCACATGTTTTGAAAATAGGCTaataatgtatttgtgtcaaacacatccatgtttttttttttattagtttggcaaatcaaaactttttttatggTTTCGATTTGAACTTTGTATTAAAAACACAGAGCAAAGGCatacatttataataatatgcagtgtgtgtgtgtttatttcagtaataaaacattgtaaatTTTTGGCAAGTATTGTGTAATtgaagtgtgatatttttacacgGTTTGTTTTTCATCAAGAATAAATTTCGTTTTGCAAAAAAGGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09397 FOXD; forkhead box protein D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240687 lncRNA upstream 237454 25995444 ~ 25997698 (+) True G177802
TU240649 lncRNA upstream 304868 25928297 ~ 25930284 (+) True G177769
TU240626 lncRNA upstream 386030 25829718 ~ 25849122 (+) False G177759
TU240624 lncRNA upstream 386638 25829718 ~ 25848514 (+) True G177759
TU240788 lncRNA downstream 99214 26336307 ~ 26412013 (+) False LOC120545651
TU240790 lncRNA downstream 123301 26360394 ~ 26361272 (+) True G177874
TU240792 lncRNA downstream 132748 26369841 ~ 26373688 (+) True G177876
TU240870 lncRNA downstream 277433 26514526 ~ 26514962 (+) True G177937
XR_005636783.1 lncRNA downstream 454288 26691381 ~ 26692888 (+) True LOC120546076
XM_039779006.1 mRNA upstream 16879 26210937 ~ 26218273 (+) True ankra2
XM_039780458.1 mRNA upstream 191852 26031698 ~ 26043300 (+) True enc1
XM_039780758.1 mRNA upstream 230045 25997920 ~ 26005107 (+) True gfm2
XM_039779775.1 mRNA upstream 241976 25982681 ~ 25993176 (+) False LOC120545449
XM_039780191.1 mRNA downstream 165017 26402110 ~ 26411912 (+) True LOC120545651
XM_039780875.1 mRNA downstream 176007 26413100 ~ 26421846 (+) True dck
XM_039780511.1 mRNA downstream 185992 26423085 ~ 26464694 (+) True LOC120545881
XM_039780402.1 mRNA downstream 236473 26473566 ~ 26475470 (+) True LOC120545806
XM_039779428.1 mRNA downstream 275730 26512823 ~ 26519174 (+) True fbp1b
TU240757 other upstream 11554 26223115 ~ 26223598 (+) True G177848
TU240698 other upstream 213321 26018164 ~ 26021831 (+) True G177809
TU240625 other upstream 392709 25833558 ~ 25842443 (+) False G177759
TU240567 other upstream 701463 25533132 ~ 25533689 (+) True G177715
TU240496 other upstream 930120 25245583 ~ 25305032 (+) False zgc:63972
XR_005636776.1 other downstream 349554 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other downstream 349554 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other downstream 349554 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other downstream 352418 26589511 ~ 26614959 (+) False LOC120546038
TU241015 other downstream 773104 27010197 ~ 27011395 (+) False nln

Expression Profile