gfra2b (gfra2,LOC106524419,LOC101468026,LOC102196137,LOC108242531)


Basic Information

Item Value
gene id gfra2b
gene name gfra2,LOC106524419,LOC101468026,LOC102196137,LOC108242531
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33401741 ~ 33520251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780814.1
TCAGCGCAAAATGTAACGGTGTGGATGTGTCCTGAGAGACGTTCAGCAGGGCGGCAGCAGTCTAATGAGGAGAGTGCAGCGAGTCGACTAATAGatgtgtgcgtgtgcgacTCTGAGCTGGGCTCCCCCGGCTGGAGGGAACCTCTGGACTGCGTCCGAGCGTCTGAACTCTGCAACCAGAACAGCCAGTGCAGCTCCCGCTACCGCATCATGCGCCAGTGCCTGTCCGGCGGGGACAAGGAGCGCAGCGCCATGCTGGCCTCCAAGGAGTGCCAGGGGGCGCTGGAGGTGCTGCAGGACTCGCCGCTGTACGACTGCCGCTGCAAGAGAGGCATGAAGAAAGAGCTGCAGTGTCTGCAGAACTACTGGAGCATCCACATGGGCCTGACGGAGGgGGAAGAGTTTTACGAGACATCTCCCTACGAGCTGATCCATTTCTCAGAGGAATTCCGACATGCCTCCATCATCTCAGACTCGTCTCTGGCGAAGGCGAGCCCCTGCTCGGAGACGGGGAAACCCTGTAACCCCTGTCTGGACGCGGCCAAGGCCTGCAACCTGAACGAGACGTGCAAGCGTCTGCGATCCGCCTACAACGCCATCTGCAGCAAGGCCACGCCCCCGCAGCCCTCTCTGGCCAATCAGGAGCCCTGCAGCCGCAAAAGATGCCAGAAGGCGCTGCGTCAGTTCTTCGAGCGGGTCCCCTGGGAGCTGAGCTACCCGCTGCTGTTCTGCTCGTGCCCGGACCAGGCGTGCGCCGAGCGCCGCCGCCGCACCATCGTCCCGTCCTGCTCCCACCAGGAGCGCCACAAACCGAGCTGCCTGGAGCTGCGGCACACCTGCCGCTCCGACGCGCTCTGCAGGTCTCGGCTCGCTGACTTCCACATGAACTGCCAGATGACGTCTCACACGGTCACCGGCTGCCCTCACGACAACTTCCACGGCTGCCTCATGTCCTACGTCGGCCTCATCGGCTCTGACGTGACTCCCAACTACAGCGACAGCAGTCCGTCCAACATCACCATGAGCCTGTGGTGCAGCTGCCGCGCCGCCGCCGGCGCTCAGGAGCGGGAGTGTGACACTTTCCACCGCGACTTCACCCACAACACCTGCCTCAAAAACGCCATCCAGTCGTTTGGTTACGGCTCAGAAGGAGGGACTGTTCCTGTAACCGATCCGTCGTCCACCTTCTTCCCCGCCGCCCAGCCGCCAATCATTGCCAAACCCGCTCCGTCTCTACACGGCAACGCCATCAAACCCATGGACACTGCTTGTATGTTCTCCACCTGTGCCAACCTGCAGGACGGAGGCCAGAAGTGCGTCCCCTCCGATGACTTTGAGTGCGAGGAGGCTCTGTTGGCTCAGGGGTCGATAGACTCTCAGGACTCTGCAGGACCCAAGAGCAGCAGCCGGCAATCAGCTCCACTCCTCCGCCACatctctgtgactgtgtgtgtctccgtccTGCCAACGCTTCTACTCCTTGTCTCATAAATGtgaactcacacacatacatgctgtaccccccccccccaccccacacccccccacacacacacacacacatacacaaacacacacacatatggcaAGACCCAGAGAAAGTCACGCGCCCGCCCTCCGCTACGAGAAAATGTCAACCGACAGACATCCAAACATCAACAATGGGCCTTTAAGGAGGGAAAGTGAACTGGAGGACGTTTGGATTAGCCTTCTCTCTCcaccacatgcacacaaacacagacaatggAGGAATAAGAATAGAAGACGGAGAAACTGGGCTGGGTATTTTGTGAGAGAGAAATAACAAAAaggcagagcagagagagactCTTGGGATTTTGGATCACAGTGACTTCAGTTCCAATGCTCCCTGTCCGgaggggtttgtgtgcttttttgtGCAGTCCGGCCCTGACTCACTCcctgcagcttttttttttgggatccGAGACAGCTGGactaaaaaaaaccaaaaggaCCACACACGCGCTCGGACAACAAGTCTTAAACCtggcagcgagagagagagaggcgacGGCTGGACAGATGGGATAGATCCTTCCACAATGTTTGTCGGCTCGATTTATCACCCCCTTGGACCTCTCCAGTGGCAAGAAATCTATACGACATACATACaaagtacaaacacacatgtacacacacgcaaacaggGTCCCCACATCGACACAAacactcatgctgaacaccagTGTGCTTTTTGCGGGTCTTAATCTTAATTTTGTTGTCGACATTCTGTACAAACTTCATTTACTgtggaatataaaaaaaaatagtccaTCCAATGAAATCTCAATGGGAGAGTGTATATTTCAAATATTGTAAGTGTAAAGTTGTGTGAgcgctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttctttgtgGGTGTTAAGGCTGGGTTTTTTCCGATTCTAATCGATCTTTAGTTTGAATGATCCGACATTGATTCATAAAATCCTGAGATCGTTCTTTTAAGAGGCTCCGTTTTAAAGCTAGAGTGAAAATGTTGGTGTCAAATGAAACTGAATGAAAGGAATTCATGTCATGCTAAAGAACGCACCAAACTTGAATCCTGTAGTGTGTtcatattaaataaaaagtacattaatgtaactgctttggggtcaatgtaattttaattttaatatttgtaaTAA
>XM_039780815.1
ACGGGAGCAGAGCGGACGCCAGTGGATTAAAGAGCGACGTTTACCGGGAGAACACGCGCGCCATTTACGCAGCAGGCTGCTCCGGAGTGCAGTCCATCGATTTAACTTGCACACGCAGTCATACTGTTGTCAATATTATCAATAGTATTCATATTTAATGTGCAGCCAGGGAGAAGAGGACAGCGGGGTCTGATCTCACGTCCTTCTCCGTTTCTGAGTGACAACCTCCGGGGAAAGTTGGAGTAACGTTAACGGGCGGGAGCGCCTGGATGTTTTAACGTTTTTAACGTGCACAGAGGAGCCGAACTACACCGAGGGAAGGGTTTGTCTCTCCGGATAAAAACCGTGGATACTCCGAAAACACGCTGCTTCAGCGGAATATGTTGTCCTCTCCGCGGACTCCGTGAATACTTCTCCGTGTGTGCAGGTGTGAGTCTGCAGAGCAAGGGGGTCCAGGCTGCCCGGTCGGTAGCACCGTCTCCAGAGGGGAGTCCAGGCTGCCCGGTCGGTAGCACCGGTTACAGGGGTCTTTTCCCCGGCAGTACCGTCTCCAGGGGTCTTTTCTCAGGCAGTACCGTCCCCAGGGGGGTTTCCCCGGCAGTACCGTCTCcaggttttttttctcaggcAGTACCGTCTCCAGGGGTCCAGGCTGCCCAGTCGGTACCGTCTCCAGGGGTATTTGCTCCGGTAGCACCGTCTCCAGGAGTCTTTGCTCACTCCACCATGCCAGCGACAGCTTTACGGGTTCCCTGCGTAGAAagggaacgagagagagagtgagagacaccgggagataaagagagaaacGGGGTGAACCGGACCAGGCAGCGCGGGAGACCgagcctgtttttgtttttctccttctttATGATTTGTGGGATTACTACCGGACGCGAAATGATCCTGATCATCACTTTGGTGTTTGTGTTGGatgtgtgcgtgtgcgacTCTGAGCTGGGCTCCCCCGGCTGGAGGGAACCTCTGGACTGCGTCCGAGCGTCTGAACTCTGCAACCAGAACAGCCAGTGCAGCTCCCGCTACCGCATCATGCGCCAGTGCCTGTCCGGCGGGGACAAGGAGCGCAGCGCCATGCTGGCCTCCAAGGAGTGCCAGGGGGCGCTGGAGGTGCTGCAGGACTCGCCGCTGTACGACTGCCGCTGCAAGAGAGGCATGAAGAAAGAGCTGCAGTGTCTGCAGAACTACTGGAGCATCCACATGGGCCTGACGGAGGgGGAAGAGTTTTACGAGACATCTCCCTACGAGCTGATCCATTTCTCAGAGGAATTCCGACATGCCTCCATCATCTCAGACTCGTCTCTGGCGAAGGCGAGCCCCTGCTCGGAGACGGGGAAACCCTGTAACCCCTGTCTGGACGCGGCCAAGGCCTGCAACCTGAACGAGACGTGCAAGCGTCTGCGATCCGCCTACAACGCCATCTGCAGCAAGGCCACGCCCCCGCAGCCCTCTCTGGCCAATCAGGAGCCCTGCAGCCGCAAAAGATGCCAGAAGGCGCTGCGTCAGTTCTTCGAGCGGGTCCCCTGGGAGCTGAGCTACCCGCTGCTGTTCTGCTCGTGCCCGGACCAGGCGTGCGCCGAGCGCCGCCGCCGCACCATCGTCCCGTCCTGCTCCCACCAGGAGCGCCACAAACCGAGCTGCCTGGAGCTGCGGCACACCTGCCGCTCCGACGCGCTCTGCAGGTCTCGGCTCGCTGACTTCCACATGAACTGCCAGATGACGTCTCACACGGTCACCGGCTGCCCTCACGACAACTTCCACGGCTGCCTCATGTCCTACGTCGGCCTCATCGGCTCTGACGTGACTCCCAACTACAGCGACAGCAGTCCGTCCAACATCACCATGAGCCTGTGGTGCAGCTGCCGCGCCGCCGCCGGCGCTCAGGAGCGGGAGTGTGACACTTTCCACCGCGACTTCACCCACAACACCTGCCTCAAAAACGCCATCCAGTCGTTTGGTTACGGCTCAGAAGGAGGGACTGTTCCTGTAACCGATCCGTCGTCCACCTTCTTCCCCGCCGCCCAGCCGCCAATCATTGCCAAACCCGCTCCGTCTCTACACGGCAACGCCATCAAACCCATGGACACTGCTTGTATGTTCTCCACCTGTGCCAACCTGCAGGACGGAGGCCAGAAGTGCGTCCCCTCCGATGACTTTGAGTGCGAGGAGGCTCTGTTGGCTCAGGGGTCGATAGACTCTCAGGACTCTGCAGGACCCAAGAGCAGCAGCCGGCAATCAGCTCCACTCCTCCGCCACatctctgtgactgtgtgtgtctccgtccTGCCAACGCTTCTACTCCTTGTCTCATAAATGtgaactcacacacatacatgctgtaccccccccccccaccccacacccccccacacacacacacacacatacacaaacacacacacatatggcaAGACCCAGAGAAAGTCACGCGCCCGCCCTCCGCTACGAGAAAATGTCAACCGACAGACATCCAAACATCAACAATGGGCCTTTAAGGAGGGAAAGTGAACTGGAGGACGTTTGGATTAGCCTTCTCTCTCcaccacatgcacacaaacacagacaatggAGGAATAAGAATAGAAGACGGAGAAACTGGGCTGGGTATTTTGTGAGAGAGAAATAACAAAAaggcagagcagagagagactCTTGGGATTTTGGATCACAGTGACTTCAGTTCCAATGCTCCCTGTCCGgaggggtttgtgtgcttttttgtGCAGTCCGGCCCTGACTCACTCcctgcagcttttttttttgggatccGAGACAGCTGGactaaaaaaaaccaaaaggaCCACACACGCGCTCGGACAACAAGTCTTAAACCtggcagcgagagagagagaggcgacGGCTGGACAGATGGGATAGATCCTTCCACAATGTTTGTCGGCTCGATTTATCACCCCCTTGGACCTCTCCAGTGGCAAGAAATCTATACGACATACATACaaagtacaaacacacatgtacacacacgcaaacaggGTCCCCACATCGACACAAacactcatgctgaacaccagTGTGCTTTTTGCGGGTCTTAATCTTAATTTTGTTGTCGACATTCTGTACAAACTTCATTTACTgtggaatataaaaaaaaatagtccaTCCAATGAAATCTCAATGGGAGAGTGTATATTTCAAATATTGTAAGTGTAAAGTTGTGTGAgcgctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttctttgtgGGTGTTAAGGCTGGGTTTTTTCCGATTCTAATCGATCTTTAGTTTGAATGATCCGACATTGATTCATAAAATCCTGAGATCGTTCTTTTAAGAGGCTCCGTTTTAAAGCTAGAGTGAAAATGTTGGTGTCAAATGAAACTGAATGAAAGGAATTCATGTCATGCTAAAGAACGCACCAAACTTGAATCCTGTAGTGTGTtcatattaaataaaaagtacattaatgtaactgctttggggtcaatgtaattttaattttaatatttgtaaTAA

Function

symbol description
gfra2 Predicted to enable glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within positive regulation of peptidyl-serine phosphorylation of STAT protein and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Predicted to be extrinsic component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

NR:

description
PREDICTED: GDNF family receptor alpha-2-like isoform X1

GO: NA

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780814.1 False 2681 mRNA 0.54 10 33401741 33520251
XM_039780815.1 True 3521 mRNA 0.54 10 33401741 33503075

Neighbor

gene id symbol gene type direction distance location
LOC120545723 NA coding downstream 138175 33257554 ~ 33263566 (-)
gpat3 gpat3 coding downstream 211724 33163597 ~ 33190017 (-)
LOC120545728 NA coding downstream 280066 33116292 ~ 33121675 (-)
helq helq coding downstream 299382 33009716 ~ 33102359 (-)
LOC120545084 NA coding downstream 446310 32950042 ~ 32955431 (-)
LOC120545889 pbdc1,LOC102798581 coding upstream 163615 33683866 ~ 33685117 (-)
LOC120545887 pbdc1 coding upstream 175125 33695376 ~ 33707710 (-)
ppp3ccb LOC102194384,LOC100690594,LOC101470341,LOC101074783 coding upstream 236286 33756537 ~ 33807087 (-)
LOC120545092 NA coding upstream 304882 33825133 ~ 33839832 (-)
LOC120545093 LOC107740693 coding upstream 333893 33854144 ~ 33856665 (-)
G180616 NA non-coding downstream 75959 33274261 ~ 33325782 (-)
LOC120545735 NA non-coding downstream 144597 33255500 ~ 33257144 (-)
G179984 NA non-coding downstream 205327 33196107 ~ 33196414 (-)
G179977 NA non-coding downstream 208410 33149291 ~ 33193331 (-)
G180660 NA non-coding upstream 233330 33753581 ~ 33755251 (-)
G180663 NA non-coding upstream 250340 33770591 ~ 33770951 (-)
G180652 NA non-coding upstream 267588 33787839 ~ 33838719 (-)
G180664 NA non-coding upstream 268334 33788585 ~ 33797896 (-)
G180654 NA non-coding upstream 304106 33824357 ~ 33824836 (-)
LOC120545720 NA other downstream 305512 33094069 ~ 33096229 (-)
hpse NA other downstream 397212 32992375 ~ 33004529 (-)
LOC120545085 NA other downstream 433591 32957851 ~ 32968150 (-)
LOC120545725 NA other downstream 549816 32790695 ~ 32851925 (-)
G179923 LOC106675582 other downstream 550131 32717847 ~ 32851610 (-)
G180640 NA other upstream 141925 33662176 ~ 33707638 (-)
G180665 NA other upstream 279031 33799282 ~ 33800420 (-)
G180765 slc25a46 other upstream 769526 34289777 ~ 34386787 (-)
ythdc1 ythdc1,LOC102794570 other upstream 1091746 34611997 ~ 34679586 (-)
apc apc,LOC104937427,LOC106906682 other upstream 1203625 34723876 ~ 34773434 (-)

Expression


Co-expression Network